Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1712 ATGGCTCAGGTTCAGGTTCCTCCTCAGAATGCGGTTCCCGGTCCCAACGGTGGTGGTGCTGGAAACCAGTTCGTGACGACGTCGCTTTACGTTGGGGATCTCGACCCCAGCGTCACTGACTCGCAGCTCTATGACTTGTTCAACCAATTGGGCCAAGTTGTGTCCGTTAGGGTTTGCAGGGACTTGACCACCCGGAGATCGCTCGGTTATGGTTATGTCAACTATAGCAACCCCCAAGATGCTGCCAGAGCTTTGGATGTTCTGAACTTCACTCCTCTCAATAACAGGCCCATCCGTATTATGTATTCGCATCGTGATCCCAGTATCCGTAAAAGTGGGCAAGGAAATATATTTATTAAGAATTTGGATAGGGCAATTGACCACAAAGCATTACATGATACCTTTTCTACATTTGGGAATATCCTTTCGTGCAAGGTAGCTACAGATTCATCTGGGCAATCAAAAGGCTATGGCTTTGTTCAATTTGATACTGAGGAAGCTGCCCAAAAAGCCATAGAGAAACTGAATGGTATGCTGTTGAATGATAAACAAGTGTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGGGAAACTCCTGTTGACAAGGCAAAATTCAACAATGTTTTTGTGAAGAATCTATCAGAATCAACCACTGATGATGAATTGAAAAACATTTTTGGTGAATATGGAACTATTACTAGTGCTGTAGTGATGAGGGATGGAGATGGGAAATCAAAGTGTTTTGGATTTGTTAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCTCTCAATGGCAAAAAAGCTGATGATAAGGAATGGTATGTTGGAAAAGCACAAAAGAAATCTGAAAGGGAGAATGAATTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAGAATTTAGACGATAGCATTAGTGATGATAAACTTAAGGAGCTGTTCTCCTCTTTTGGCACCATTACCTCTTGCAAGGTTATGAGAGACCCAAATGGTGTAAGTCGTGGATCAGGATTTGTTGCATTCTCAACTCCCGAGGAGGCATCTAGAGCACTCTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTAGCCCAACGCAAAGAAGATAGGAGAGCTAGACTGCAGGCTCAGTTTGCTCAAATGCGACCTGTTGGAATGCCACCATCTGTTGGTCCTCCTCGTGTTCCAATGTATCCCCCAGGTGGTCCAGGTATTGGTCAACAAATATTTTATGGCCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGGTATCAACAGCAACTTGTGCCCGGTATGAGACCAGGTGCGGCTCCTGTGCCAAATTTCTTCGTGCCAATGGTTCAGCAGGGACAACAGGGACAGCGTCCTGGTGGAAGGCGTGCAGGTGGAGTGCAGCAGTCCCAGCAACCAGTTCCAATGATGCCACAGCAGATGCTTCCTAGGGGACGCGTCTATCGCTATCCTCCTGGTGGTAGGGGTATTCCCGATGTTCCTATGCCTGGGGTTGCTGGAGGCATGTTTTCTGTTCCATATGATGTGGGTGGGATGCCACTGCGTGATGCTTCAATTTCCCAGCAAATTCCTATTGGGGCTTTGGCAACGGCTTTGGCTAATGCTTCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCCCTTGTGGAACAGTTAGAGCCTGATAATGCTGCCAAAGTGACAGGCATGCTTCTTGAGATGGACCAGACTGAAGTTCTGCATTTGCTCGAGTCGCCAGAAGCCCTGAAAGCAAAGGTTGCTGAGGCAATGGACGTCCTAAGGAATGTTGCTCAGCAGCAGTCTGGTGGTGCAGCAGCTGATCAGCTGGCTTCATTGTCACTTAATGACAACCTTGTTTCTTAA 1953 0.4685 MAQVQVPPQNAVPGPNGGGAGNQFVTTSLYVGDLDPSVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERETPVDKAKFNNVFVKNLSESTTDDELKNIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKADDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSISDDKLKELFSSFGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPPRVPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQRPGGRRAGGVQQSQQPVPMMPQQMLPRGRVYRYPPGGRGIPDVPMPGVAGGMFSVPYDVGGMPLRDASISQQIPIGALATALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQSGGAAADQLASLSLNDNLVS 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1712 650 PANTHER POLYADENYLATE-BINDING PROTEIN 16 633 - -
Aed10g1712 650 SMART rrm1_1 116 188 IPR000504 GO:0003723
Aed10g1712 650 SMART rrm1_1 310 382 IPR000504 GO:0003723
Aed10g1712 650 SMART rrm1_1 28 101 IPR000504 GO:0003723
Aed10g1712 650 SMART rrm1_1 207 279 IPR000504 GO:0003723
Aed10g1712 650 MobiDBLite consensus disorder prediction 473 493 - -
Aed10g1712 650 Gene3D - 116 188 IPR012677 -
Aed10g1712 650 PANTHER RNA BINDING PROTEIN 16 633 - -
Aed10g1712 650 SUPERFAMILY RNA-binding domain, RBD 27 196 IPR035979 GO:0003676
Aed10g1712 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 283 IPR000504 GO:0003723
Aed10g1712 650 Gene3D - 21 115 IPR012677 -
Aed10g1712 650 Gene3D - 292 394 IPR012677 -
Aed10g1712 650 SMART poly_2 563 626 IPR002004 GO:0003723
Aed10g1712 650 CDD RRM1_I_PABPs 28 107 - -
Aed10g1712 650 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 28 624 IPR006515 GO:0003723
Aed10g1712 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Aed10g1712 650 Gene3D - 547 630 - -
Aed10g1712 650 CDD RRM3_I_PABPs 205 284 - -
Aed10g1712 650 SUPERFAMILY PABC (PABP) domain 491 644 IPR036053 GO:0003723
Aed10g1712 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Aed10g1712 650 Coils Coil 281 305 - -
Aed10g1712 650 SMART rrm2_1 28 101 IPR003954 GO:0003676
Aed10g1712 650 SMART rrm2_1 116 188 IPR003954 GO:0003676
Aed10g1712 650 SMART rrm2_1 310 382 IPR003954 GO:0003676
Aed10g1712 650 SMART rrm2_1 207 279 IPR003954 GO:0003676
Aed10g1712 650 CDD RRM4_I_PABPs 308 386 - -
Aed10g1712 650 CDD RRM2_I_PABPs 113 189 IPR045305 -
Aed10g1712 650 Pfam Poly-adenylate binding protein, unique domain 559 623 IPR002004 GO:0003723
Aed10g1712 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 276 IPR000504 GO:0003723
Aed10g1712 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Aed10g1712 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 99 IPR000504 GO:0003723
Aed10g1712 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Aed10g1712 650 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 628 IPR002004 GO:0003723
Aed10g1712 650 Gene3D - 191 291 IPR012677 -
Aed10g1712 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 187 IPR000504 GO:0003723
Aed10g1712 650 SUPERFAMILY RNA-binding domain, RBD 206 389 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1712 Aed-Chr10 21785803 21792227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1712 26 649 Eukaryotic Initiation Factors Gene Family AT1G49760 75.906 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1712 K13126 - gmx:100813735 1112.06