Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1705 ATGGCCGGCGAGCTCGCCGGAGACCACACGCCGGAGCTCCTGTGTCTGGTCCACGACATCGCCGGAATGTGCGCTGCGGGGACCTCCTCCGGCGCCGCCATGTTCCGCAGGGACTGCACCGATCTCGTTCGCCGGATCTCCCTCCTCACCCACCTCTTCGAGGAGATTAAGGAACTAAACAAAAACAACAACGTTGTCGGTTCCTCTTCTTCTTCTACCTCAGAGTCCTCGTCTGCTACCTCGGAGTCCTCGTGGTCCTCTGATCTGGTCCTCGCGCTTCACTCCGCAAGACGCTTGCTTTCCGTCGCTAGAAACTTCCGCTCCAATTGCTCCTCTGATGGAGCTGCAAAGACCATTGTCTTCCAATTTCAGTGTGTGACATGGAAATTGGAGAAACTGTTGAGCAATTTGCCGTATGACAATTTGGACATCTCAGAGGAAGTCAAGGAGCAGGTGGATTTGGTGAGAACACAATTGAGACGAGCCACGGATAAATACGGGTTTATGATTTCAAAGATGCCGTCTCATGAATTATCCCAGCCCCTGGCTGAAGAAATTGGTCAGGTTCTTGGAAAATCTGTGAGTGGATTGCACAAACAACATAGCTGCCCTGAAAATTTATCAGAACTAGACAGCATTTCACCAAACAATGGAGACAAGAGTTGCAGCACGATTCGAGCCGGATCTCGCTTGGAAAGAACAAGGAGCATCCCTACTGAAGTTGAAGTTTCCTTAAGCACAACCGATCCCGAAAGTCTAGAAATTTCTGAGACAAAGAGTCTACCTGAGGTTAAAAAGACTGAAGCAATTGTGATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTAGCCACTGGTCAGACATATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAACACAACATGTCCTAAAACTCAGCAGAAGCTCCATCATATGACCCTTACACCAAACTATGTTTTAAGAAGCCTTATTTCTCAGTGGTGTATAGAGCACAACATTGAGCAGCCAACAGGACTAACTAATGGAAAATTGAAGAAGAGTGATGGATCATTCAGAGATGTTACAGGTGACATTGCAGCAATCGAAGCTCTTGTCCGGAAGCTCTCGAGCCGATCTATTGAGGAGCGTAGAGCAGCTGTTACTGAACTTCGATCGCTATCCAAACGAAGCACTGACAATAGGATACTAATTGCTGAAGCCGGAGCAATCCCAGTTCTAGTCAACCTTCTAACATCAGAAGATGTATTGACACAAGACAATGCAGTTACTTCAATTCTCAACCTTTCCATCTATGAAAACAACAAGGGACTTATAATGCTTTCCGGTGCCATTCCATCGATTGTCCAAGTCCTCCGGGCAGGAACTATGGAAGCAAGAGAAAATGCAGCAGCAACCCTTTTCAGCTTGTCACTTGCAGATGAGAACAAGATTATAATTGGCTCCTCAGGAGCCATACCGGCCTTGGTGGAGTTGCTCCAAAATGGGAGTCCTAGAGGGAAGAAAGATGCAGCAACAGCATTGTTCAATCTATGCATTTATCAAGGGAACAAGGGCAGGGCCATCAGGGCAGGAATCATCACAGCATTGTTGAAGATGCTTACAGATTCGAGCAAATCGATGGTTGACGAAGCCCTAACAATAATGTCGGTTCTTGCCAGCCACCAAGAGGCAAAAGTTGCCATAGTGAAAGCCAGCACCATACCAGTTTTGATAGATCTTTTGAGGACTGGATTGCCACGCAACAAAGAGAATGCAACTGCTATTTTGCTTGCATTGTGCAAGAGGGATGCAGACAATCTTGCTTGTATAAGTAGACTTGGTGCTGTCATACCTCTCTCTGAACTTGCTCGAAACGGCACAGAGAGGGCGAAACGGAAGGCTACTTCATTATTGGAACATCTTCGCAAGTTGCAGCAACTTTGA 1956 0.4657 MAGELAGDHTPELLCLVHDIAGMCAAGTSSGAAMFRRDCTDLVRRISLLTHLFEEIKELNKNNNVVGSSSSSTSESSSATSESSWSSDLVLALHSARRLLSVARNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLPYDNLDISEEVKEQVDLVRTQLRRATDKYGFMISKMPSHELSQPLAEEIGQVLGKSVSGLHKQHSCPENLSELDSISPNNGDKSCSTIRAGSRLERTRSIPTEVEVSLSTTDPESLEISETKSLPEVKKTEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLHHMTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKLKKSDGSFRDVTGDIAAIEALVRKLSSRSIEERRAAVTELRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLSGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGSSGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENATAILLALCKRDADNLACISRLGAVIPLSELARNGTERAKRKATSLLEHLRKLQQL 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1705 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 412 IPR000225 GO:0005515
Aed10g1705 651 Pfam U-box domain 272 343 IPR003613 GO:0004842|GO:0016567
Aed10g1705 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 494 536 IPR000225 GO:0005515
Aed10g1705 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 535 577 IPR000225 GO:0005515
Aed10g1705 651 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Aed10g1705 651 SUPERFAMILY ARM repeat 371 645 IPR016024 -
Aed10g1705 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Aed10g1705 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Aed10g1705 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 453 495 IPR000225 GO:0005515
Aed10g1705 651 CDD RING-Ubox_PUB 276 318 IPR045210 -
Aed10g1705 651 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 16 648 - -
Aed10g1705 651 SUPERFAMILY RING/U-box 270 346 - -
Aed10g1705 651 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Aed10g1705 651 Gene3D - 351 650 IPR011989 -
Aed10g1705 651 Coils Coil 631 651 - -
Aed10g1705 651 Pfam Armadillo/beta-catenin-like repeat 402 440 IPR000225 GO:0005515
Aed10g1705 651 Pfam Armadillo/beta-catenin-like repeat 484 522 IPR000225 GO:0005515
Aed10g1705 651 PANTHER U BOX DOMAIN-CONTAINING 16 648 - -
Aed10g1705 651 Coils Coil 145 165 - -
Aed10g1705 651 SMART arm_5 442 482 IPR000225 GO:0005515
Aed10g1705 651 SMART arm_5 524 564 IPR000225 GO:0005515
Aed10g1705 651 SMART arm_5 401 441 IPR000225 GO:0005515
Aed10g1705 651 SMART arm_5 483 523 IPR000225 GO:0005515
Aed10g1705 651 SMART arm_5 565 605 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1705 Aed-Chr10 21704381 21707583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1705 33 650 U-box Gene Family AT1G23030 62.460 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1705 - - gmx:100815448 1141.33