Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1642 ATGGGTCGAGGAAGAATACCAATGGAGCTCATCCAGAAGGAGAAAGCCCGGAAGGCAACATTCACCAAGAGAAAGAAAGGGCTAATGAAGAAAGTGTATGAATTCTCCACACTCTGCGGCGTCGACGTCGGAGTAATCCTCTACGCGCCGGCCTTCCTCAATGAACCGGAGACGTGGCCGGCGCAGGACAAGGATCCAGACGAAATAAAACGTGTCATTAAGAAATACCACGACACCACCGCCGACCGCCGCCCCAAGGTGTACGACGTGCACGAGTATTTCAACGACCGGACGAAGAAGATCGAAGGCGAGGTGCAGAAGGTGCAGAAGGAGAAGATAAAGCTCACGTATCCAACATGGGACGACTCATACAACAGCCTCGGAGAGGAACAGCTGAGGATGTTTGTTGGTGTTCTTGATTCCAAGCTCGATGCTTGTAATCAAAGGATGAACATGTTGAAGAGAGATAATATTACAAAGGGAAAAGGAATTGATCACTCTTACGTGGGTAATAGTCACGTAAGTTTCATGCAGAACATGTGTCACACACAACTCTTTCAACCTAGTGATCATAGCAACCAAGTAGCATCATTTTACCCTTATCATCAATTTGGCCAAAGTTCTCAATTACCTTCTTCTATGTTCCATTTTGGACAAAGTTGTATTGAGAAAAATGCAATGGTGGATTGGGCTAATAATAATAATAATAATAATCAAGTTGGTGGTGCTGAAAAAATGGGTGCTGATCACAAAAACCAAAACTCCTCAACATGCTATTACAACAACAATGGAAATATGCAAACAACAATGCAGCCATACACGGTTGGTAATTTGCAAAGTCTTCCTCATCCTTCCCAGTTTCAGTATGATGCAACTTTTCAGAGCCTGCCAGATCAACCAGGACAACCACCAGGGTTTGGAATTAATGGCTTTTACGATTCAAATATGCTTCAACCTCAGTTTTTTAACTGCATGCATGGAAGGAAGTAG 990 0.4384 MGRGRIPMELIQKEKARKATFTKRKKGLMKKVYEFSTLCGVDVGVILYAPAFLNEPETWPAQDKDPDEIKRVIKKYHDTTADRRPKVYDVHEYFNDRTKKIEGEVQKVQKEKIKLTYPTWDDSYNSLGEEQLRMFVGVLDSKLDACNQRMNMLKRDNITKGKGIDHSYVGNSHVSFMQNMCHTQLFQPSDHSNQVASFYPYHQFGQSSQLPSSMFHFGQSCIEKNAMVDWANNNNNNNQVGGAEKMGADHKNQNSSTCYYNNNGNMQTTMQPYTVGNLQSLPHPSQFQYDATFQSLPDQPGQPPGFGINGFYDSNMLQPQFFNCMHGRK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1642 329 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Aed10g1642 329 CDD MADS_SRF_like 2 77 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aed10g1642 329 SUPERFAMILY SRF-like 2 97 IPR036879 GO:0003677|GO:0046983
Aed10g1642 329 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Aed10g1642 329 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed10g1642 329 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed10g1642 329 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 250 - -
Aed10g1642 329 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Aed10g1642 329 PANTHER MADS BOX PROTEIN 3 250 - -
Aed10g1642 329 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1642 Aed-Chr10 21214724 21215713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1642 1 149 Type I MADS-box Gene Family AT5G55690 36.364 5.79e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed10g1642 SRF-TF 3.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1642 - - gmx:102660566 375.17