Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1620 ATGAAAGATGGTGGTGGTGGTAGGAAGCAGGGTGCAGCCTCACCCTGTGCTGCATGCAAGCTTCTTAGGAGAAGGTGTGCTCAGGATTGCGTTTTTGCTCCTTATTTTCCTGCTGATGAGCCTCAGAAGTTTGCAAATGTTCACAAGGTCTTTGGTGCCAGCAATGTCAACAAAATGCTTCAGGACTTAGAAGAGCATCAGCGAGGAGATGCAGTGAGCAGCATGGTGTATGAAGCAAACGCAAGAGTGAGGGACCCAGTGTATGGCTGCGTAGGGGCAATTTCGTCTCTTCAGCAACAAATTGATGTGTTGCAGACCCAATTGGCTGTGGCTCAGGCTGAGGCAGTGCACCTAAGGGTTCGGCAAACTGCATCAGTGATCTACAGCCCCACTAGCCCTTCCAACAGCAATGGCTCCCCTTCACAACAGGCCAAGCCTTTTTTTGACATGGACATGGACATGGTGGACCACACCACCTATGCTGATCATTCTATCTGGTGA 501 0.503 MKDGGGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLEEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASVIYSPTSPSNSNGSPSQQAKPFFDMDMDMVDHTTYADHSIW 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1620 166 Coils Coil 94 114 - -
Aed10g1620 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 146 - -
Aed10g1620 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 6 146 - -
Aed10g1620 166 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Aed10g1620 166 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1620 Aed-Chr10 21014995 21019179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1620 8 125 AS2 family AT1G31320 90.678 8.57e-70 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed10g1620 LOB 1.3e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1620 - - gmx:100306560 265.774