Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1615 ATGTTGGGTGGTCTATACGGAGACCTTCCTCCGCCTTCATCCGCGGAGGAAGACAACAAGCCAGCTCTCAATGTGTGGTCTTCCAGCACCAAGATGGCTCCCGCCACTCTCCGCAAGCCCGCCTTCGCCCCCCCGCAAACCCTCCTCCGGGCCCAGCCCAAGCCCAAGCCCATCACTAACAACCCCAAGCCCGTGCTCTCCTCCTCCTCCTCTCCCGCCCTTCCTCCCCTGGAAGACTCCCTCCAGCCCGCCGCCCTCGTCGGCGTCCAGTCCACCGTCCTCGAGGAGTACGACCCGGCCCGGCCCAACGACTACGAGGAGTACCGCCGCGAGCGCAAGCGGAAAGCCCGCGAGGCCGAGGTGATGCGCGAGCTCGAGCGCCGCCGCCAGGAGGAGGAGGAGGAAGAGAAGGAGCGCGAAAAGGAAAGAGAAAGAGAGAGAGATAGAGATAGAGAAAAGGATTACACTGATTCGAGGCTGAATGTTTCCGGGGAAGAGGCGTGGCGGAGGCGCGCCGCGATGAGCGGGGCGCCACCGGCCGGGGCGGTGGCGCCGAGGTCGCCCTCGCCGCCGCTGGTTATGCCGGGGAATTCTGACGGGTTCAGCATTGGGAAGTCGGAGACGGGTGGGCTGGGGGTTGGGGCAGGCGGGCAGATGACGGCGGCACAGCGGATGATGGCGAAGATGGGGTGGAAGGAGGGGCAGGGGTTGGGGAAGCAGGAGCAGGGGATCACCACTCCCTTGATGGCCAAGAAGACAGATCGACGGGCCGGGGTTATCGTCAATGCCAGTGACAACAGCAACAGCAGCAGCAAGAAAGTCAAGAGTAGTGTTGTTAACTTCAATGGTGTGCCTACCAAGGTGCTGCTGCTTAGGAACATGGTGGGTCCTGGTGAGGTAGATGACGAGCTGGAAGATGAGGTAGGATCAGAATGTGCCAAATATGGAACTGTGACCCGAGTTCTGATATTCGAGATAACAGAACCAAATTTCCCCGTTCATGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGACCTGAAGAAACAACCAAAGCACTTGTTGACCTCGATGGTCGGTACTTTGGGGGTAGAGTGGTGCGTGCCTCGTTTTATGATGAGGAGAAGTTTAGCAAGAACGAGTTAGCTCCAATGCCAGGAGAAATTCCTGGCTTCACCTGA 1179 0.592 MLGGLYGDLPPPSSAEEDNKPALNVWSSSTKMAPATLRKPAFAPPQTLLRAQPKPKPITNNPKPVLSSSSSPALPPLEDSLQPAALVGVQSTVLEEYDPARPNDYEEYRRERKRKAREAEVMRELERRRQEEEEEEKEREKERERERDRDREKDYTDSRLNVSGEEAWRRRAAMSGAPPAGAVAPRSPSPPLVMPGNSDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNSNSSSKKVKSSVVNFNGVPTKVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVHEAVRIFVQFERPEETTKALVDLDGRYFGGRVVRASFYDEEKFSKNELAPMPGEIPGFT 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1615 392 MobiDBLite consensus disorder prediction 99 166 - -
Aed10g1615 392 MobiDBLite consensus disorder prediction 36 190 - -
Aed10g1615 392 PIRSF SPF45 3 388 IPR040052 GO:0045292
Aed10g1615 392 SMART rrm2_1 288 369 IPR003954 GO:0003676
Aed10g1615 392 SUPERFAMILY RNA-binding domain, RBD 290 376 IPR035979 GO:0003676
Aed10g1615 392 Gene3D - 283 381 IPR012677 -
Aed10g1615 392 SMART G-patch_5 216 262 IPR000467 GO:0003676
Aed10g1615 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 373 IPR000504 GO:0003723
Aed10g1615 392 MobiDBLite consensus disorder prediction 61 76 - -
Aed10g1615 392 Coils Coil 105 151 - -
Aed10g1615 392 Pfam G-patch domain 221 260 IPR000467 GO:0003676
Aed10g1615 392 ProSiteProfiles G-patch domain profile. 218 264 IPR000467 GO:0003676
Aed10g1615 392 CDD RRM_UHM_SPF45 285 381 IPR034653 -
Aed10g1615 392 PANTHER SPLICING FACTOR 45 SPF45 1 383 IPR040052 GO:0045292
Aed10g1615 392 MobiDBLite consensus disorder prediction 1 22 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1615 224 259 C2H2 Transcription Factor Family AT5G26610 61.111 6.06e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1615 K12840 - gmx:100805487 532.332