Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1612 ATGATGGGAGTGGGAAGTGATGCCAATGCTTATTTTGGTTTCGCCGTCGTGAAGGGGAGGAGTAAGAAGCAGGATACAGGACACACAGGACTGTCTGTGATGCGCATGGAAGAAGTTTGTCTGAATAGTGAGCCGCTTTTTGATGAAAGCGATGAGGTTGATGTTGAGGGGAAATCTTCTAAAAAAAGTGAAGCCAATAATCCAAGACCAGAAACGAGAACTGGTTGTCCGGCAATGATAGTGATTAGAATGGTTGAGTCCAAGAGATGGAAAATAGTGGAAGTTGAGCTTCAACACAACCATCAAGTGAGTCCACAGAGCAAACGGTTTTATAAGTCACACAAGAAAATGATCCTTGAAGCCAGCAAATCCCAACCACCACCAGAGCCTGTAACAGAAGTACACACCATTAAGTTGTATCGAACCACTGTCATGGATGTTGATTATAATGGTTACTCAAATTTTGAAGAAAGTCATGACACCAATTTTGATAAATTGAAACATTTGGAACTTAGAGAAGGGGATGCCAATGTAATTTTGAGGTCCAGCTCGCAAAGGTGTATACGAAAGAAATCTTTCAAAAGTTTCAATCTGAGGTTGAGGGTAAGTGCCAATGGATCCATAATAACATACGTTGTGAAAGAAAGAGTTGAAGCTGAGGGGAATGAGAAGGGAGTTAAAAGCTTTGAAGTTTTGTACGAGACTACAGAATTGGATATCCGTTGCATATGCAGTTTGTTCAATTACAAAGGATATTTGTGCAGGCATGCATTGAATGTTCTCAACTATAATGGCATTGAGGAAATCCCATCTCGGTACATCCTGTGCCGTTGGAGGAGTGATTTCAAGCAAACGTTTAATCAATTCCATGTCTCTGGTAATGTTGATACCTACAACCCTGTGCACTTGTATACTCATCTGTTTAACAGTGCTCTTCCAGTGTTAGAAGTAGGGGCACAGTCACAGGAGCATTATGTGGTTGCTTTAAAAGAACTGGAGGAGTTGTTAGGCAAGTTTGATATAATAGAGGATAATAACTTAATTTTTTGCCCTCGGTCAGTTAGCTTTGTATTTGAGGATTTCCTCCACACAATTCATGATCGAATAGAGGTAAAGAAGTCTGTTAATTCCAAATAA 1137 0.4019 MMGVGSDANAYFGFAVVKGRSKKQDTGHTGLSVMRMEEVCLNSEPLFDESDEVDVEGKSSKKSEANNPRPETRTGCPAMIVIRMVESKRWKIVEVELQHNHQVSPQSKRFYKSHKKMILEASKSQPPPEPVTEVHTIKLYRTTVMDVDYNGYSNFEESHDTNFDKLKHLELREGDANVILRSSSQRCIRKKSFKSFNLRLRVSANGSIITYVVKERVEAEGNEKGVKSFEVLYETTELDIRCICSLFNYKGYLCRHALNVLNYNGIEEIPSRYILCRWRSDFKQTFNQFHVSGNVDTYNPVHLYTHLFNSALPVLEVGAQSQEHYVVALKELEELLGKFDIIEDNNLIFCPRSVSFVFEDFLHTIHDRIEVKKSVNSK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1612 378 MobiDBLite consensus disorder prediction 52 68 - -
Aed10g1612 378 Pfam FAR1 DNA-binding domain 54 104 IPR004330 -
Aed10g1612 378 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 63 179 - -
Aed10g1612 378 MobiDBLite consensus disorder prediction 50 74 - -
Aed10g1612 378 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 194 343 - -
Aed10g1612 378 ProSiteProfiles Zinc finger SWIM-type profile. 229 265 IPR007527 GO:0008270
Aed10g1612 378 SMART 26again6 240 267 IPR006564 GO:0008270
Aed10g1612 378 Pfam SWIM zinc finger 237 262 IPR007527 GO:0008270
Aed10g1612 378 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 194 343 IPR031052 GO:0006355
Aed10g1612 378 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 63 179 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1612 Aed-Chr10 20959016 20963074 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aed10g1612 FAR1 1.2e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1612 K17604 - gmx:100811666 268.47