Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1593 ATGAATAATCCTTCTTCTTCTAAGTCCAGTTGCAATGCAACAAATTTGGTTATTTTAATGCATGTGAGTTGTGACATATTTGATTCACACATCAATCACATCCATGGAGGAGAGGAAAGAACCACCAGGTTTGAAGAAGAGAGTGGTGTTGGTGTTCATGACAAGAAGCTGAAGCTGGTTATGGATAGTCACTCTGACACTGAGACTTGTTGTGCTGCTCCTCCAAGGAGATCCAAGAGAATGAAGGTTAAGACAATCAACAACCTTTCCTCCAATAATCATCACTACCCTTTTTCTTCTTCTACTTCTTGTGCTGCTGCTCCTCTGGCCGATAATGGCTCTTCACCAGTGTCAGAGGTGGAGCAGGAGCAGCAAGAAGAGGTTGCTATGTGCTTGATGCTGCTGTCTAGAGACTCTTCTGGTGGCGGATTCAACAAGGGTCGTTTTGCTTCGGCTGTTGCTGAATCTTCTGGTAACAACTCGGTTATTCTAGAAGCAAATAAATCATCCTCTCCCGATACCCTCATTGGTTTCATCAATGCTAATAACTACAACAACAACTCTGTCTCTAAACATCATCTTGCACATAATCTTGTGGAGAAGAAGTTGCTTAAGGTCAAGGATATCAAGTTGAAAAAGTCTGCTGAGTTTGGTGCCAGATATGGTTCCAAAACCAAAATGCTAGTAGACTCAGGTGTTTCAAATAATGGTGGTGAATTCAAGTCAAGCAAACACAGTAATACTGCATCTGTAGTAAGGAAGCTAGTGGTGGAGGATTTGGAGTATGATAGAAGAACAGATGGAACAACTGCTACTACCACTACAAGGAGGTTTGATTCAAGAAAGAGAAGCAACAACAACAACAACAACAACTATGATCATTCTAATTCTCTTGGTGGTCACAATCTTGGAGGTGGTGGTGTTTCTTCTAGCAAGAAGATGGAAAATGCTTTTGTTGGCACAAAAGGTTGTAAAAAGTATCATGATGAGTGCTTGGAAGGTGGTGAAAGGGACAATGCTTGTTCTTATGCATATGATTCATTAGATGTGATGAGTGATGAAAACAGTTCAGACACAGAATCTTTTCCTTCTCCAAGGTCTCAAAAAGTGAAGTCTATCAATGGAAAAAAAAAGTCCAGCAACACTAGCACCAGCAAGGCCAAGAAGTTGAAGTTGAACAAGGCATCTTCTAAGAAAAGCAAGGAGCATGAGTGTCCAATCTGCTACAAAGTTTTCAAGTCAGGTCAAGCTTTAGGGGGTCACAAAAGATCACATTTCATTGGAGGCTCTGAAGAAAATACCACTGTGGTCATCAAACAAGTTGTTGCTCCTTGCTTTATCGATCTCAATCTACCTGCTCCTAAAGGAAAACTGAATTGGCATGCCTTTTGCTTTGTGCCAATTACTACATGTGTTATTCCCGATTCAATTCTTTTACCGTTGGGATGTAAGGGAGAGAGGACCACTGATATTATAATAGTAGCTGCTCACGCTGTTCCTCTTGCTCCCGTGTGTGTTGGTTCAATGGTTCAAGACACAAAAACTACTGTAATCGACAGCGAGAATGAAATTGCATGCAAGCAGAAACTGTGA 1593 0.4118 MNNPSSSKSSCNATNLVILMHVSCDIFDSHINHIHGGEERTTRFEEESGVGVHDKKLKLVMDSHSDTETCCAAPPRRSKRMKVKTINNLSSNNHHYPFSSSTSCAAAPLADNGSSPVSEVEQEQQEEVAMCLMLLSRDSSGGGFNKGRFASAVAESSGNNSVILEANKSSSPDTLIGFINANNYNNNSVSKHHLAHNLVEKKLLKVKDIKLKKSAEFGARYGSKTKMLVDSGVSNNGGEFKSSKHSNTASVVRKLVVEDLEYDRRTDGTTATTTTRRFDSRKRSNNNNNNNYDHSNSLGGHNLGGGGVSSSKKMENAFVGTKGCKKYHDECLEGGERDNACSYAYDSLDVMSDENSSDTESFPSPRSQKVKSINGKKKSSNTSTSKAKKLKLNKASSKKSKEHECPICYKVFKSGQALGGHKRSHFIGGSEENTTVVIKQVVAPCFIDLNLPAPKGKLNWHAFCFVPITTCVIPDSILLPLGCKGERTTDIIIVAAHAVPLAPVCVGSMVQDTKTTVIDSENEIACKQKL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1593 530 MobiDBLite consensus disorder prediction 352 398 - -
Aed10g1593 530 ProSitePatterns Zinc finger C2H2 type domain signature. 405 425 IPR013087 -
Aed10g1593 530 MobiDBLite consensus disorder prediction 284 304 - -
Aed10g1593 530 Pfam C2H2-type zinc finger 403 425 - -
Aed10g1593 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 403 425 IPR013087 -
Aed10g1593 530 MobiDBLite consensus disorder prediction 267 310 - -
Aed10g1593 530 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 43 455 - -
Aed10g1593 530 MobiDBLite consensus disorder prediction 352 390 - -
Aed10g1593 530 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 43 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1593 Aed-Chr10 20813171 20817279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1593 385 454 C2H2 Transcription Factor Family AT1G26610 61.111 1.10e-19 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed10g1593 zf-C2H2_6 5.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1593 - - gmx:100817538 312.768