Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1588 ATGAAGACGTACAGCTTCCATTCTGCAGTTCTATGTCAGTCTTTTCTCCTAATTCTATGCCTATGGGGAAGACCCTTCATCATGGCAATACCAATACCAATGCCAATAGGGGTAGTTCTTGATTTGATGTCCTCAATTGGGAGTATGTCTAATAGTTGCATATGGATGGCATATCACGATTTCTATGAACACCACCCGAATTACAAAACCAGACTTGCTCTTCAGATCAGAGATTCTGGGGATAATGTTGTCACAGCAGCTTCTGTAGCTCAAGAATTGTTAAACGAGAAGGTTCATGCAATCATTGGACCACAAACATCAGAACAAGCATGGTTCATCATAGAACTTGGAAGCAAAGGTCAAGTGCCCATAGTCTCATTTTCCGCTACAAGTCCATCACTTTCCCCGACCCAAAAGCCTTACTTCATTCGCACGGCACGGGACGATTCCTCTCAAGTGGAAGCCATAGCCGCCATTGTACAAGTTAATGGCTGGCATGAAATAATTCCAATATATGAAGACACCGAATACGGCAACGGTCTTAATCCATACCTAAACGACGCCTTTGTAAAAATCAGCACACGAGTGCCTTACAGAAGCGTCATTGGTCCAAGGGCCGGCACTGAGATTTCGGATGAACTCAAGAAACTGAAGCTAATGGCTACAAGAGTGTTCCTTGTTCACATGAGCATTGAACTTGGGTGTAAGTTGTTTATGGCTGCAAAGAAAGAAGGGATGATGACAATGGGGTATGCATGGATAGTCACAGAGGGTCTATCTGCAGAGGTAGACCCTATGGTGTCAAAATTAAAATGCATGGGAGCCATGGAAGGGCAATTAGAGCCATCGACTCTTGAAGTGTTCAATGTTGTGGACAAGACAGAGAGGAGAATTGGAGATTGGGTTCCAGAGAGGGGGCTTTCTAAATTGGTGCAGCCAAAATGGCCAGGTGACACAACAGAGCCCCCTGCAAAGTTGAGGATTGGAGTCCCAGCAACAAACAGTGTCGATGAATTCAAGAAATTTCTGAACTTCTCTTTTGATGTGTTTTTTGAAGCCTTGAAGGTTTTACCCTTTCCCTTGCATTATGAACTCTTGGCTTTCGAGAAAAATGGAGAGACTGCTGGTACCTACGATGAACTTATTATGCAAATTATGGAAAAGAAGTATGATGGTGTGGTTGGGGACGTGACAATTGTGGCTAAGCGCTCAAAGTATATTGATTTCACAATGCCATTTTCAGAATCAGGCGTGGCAATGTTGGTTCTGGCGAAGAATGACGATAGACAAAACATGTGGATATTCCTGAAGCCATTTAGTTGGGAGCTTTGGTTGGCGACTGGTGCAGCATTCATCTTCACAGGTTTCATAGTTTGGTTTTTCGAACACCGCTCAAACTCAGAGTTCAGGGGCACTCCAAAGAACCAAATCGGCATGGCTCTCTGGTTTTCCTTCTCAACACTCGTCTTTGCTCATAGGGAGGAGGTAGTGAACAATTGGTCACGGTTTGTGCTGATTATATGGTTCTTTGTGGTACTCATCATAACTCAAAGTTACACTGCAAGTTTAGCTTCAATTCTCACAGTGCAGAAACTGCAGCCTGTGTTTGTGGACGCAGAGGAAATAAGAACAAACAATTACTTTGTGGGATATCCTCAGAATTCATTTGTGAAAGGGCTACTAATAGAAAAGTTAGGATTCAATGAATCTAAGTTGAAGGGTTACCAGGGCCCTGAGGCCTATCAACAAGCTCTGTCTCTTGGAAGCAACAATGGAGGAGTTGCTGCTATTTTTGATGAAATTGTTTTCATTAATCTCTTCTTTGCTAAATATGGCTGCAGAAAGTATCAGATGGTTGGACCAACATACAAAACCGATGGCTTTGCCTTCGCATTCCCACAAAACTCTCCATTGGTACCTTATTTGTCTAGGGCAATCTTAAACATCACTGAAAACAAAACAACCTTTGATGGGATTAAGAAGAAGCACTTCTCAAGCGAAGTCATAAGTACTAGTGAAGATCAAAGTAGCACCACAATGGCATTTGGAAGCCCTAACTTAACATTAAAGAGCTTTGGGGGGCTTTTCATCATCACACTGTTCACTTCATTGCTCCCACTCATTGTTCATTTGTTTAATAAGTTCATACATTCAAAAAGGAATATTGGTCAAGACTTTCAGCAATCCCTTATGGAGATGATGGCTGAATTGGCAAAGCATTTCAACAAAGAAGAGTGCTCTTTACATGATCCTCCTCCAAATAATCTGAGAATGGAGGAAGGTTCACATGATCAATCAATAATTCACAACGAGGAGGATTTATGA 2325 0.4224 MKTYSFHSAVLCQSFLLILCLWGRPFIMAIPIPMPIGVVLDLMSSIGSMSNSCIWMAYHDFYEHHPNYKTRLALQIRDSGDNVVTAASVAQELLNEKVHAIIGPQTSEQAWFIIELGSKGQVPIVSFSATSPSLSPTQKPYFIRTARDDSSQVEAIAAIVQVNGWHEIIPIYEDTEYGNGLNPYLNDAFVKISTRVPYRSVIGPRAGTEISDELKKLKLMATRVFLVHMSIELGCKLFMAAKKEGMMTMGYAWIVTEGLSAEVDPMVSKLKCMGAMEGQLEPSTLEVFNVVDKTERRIGDWVPERGLSKLVQPKWPGDTTEPPAKLRIGVPATNSVDEFKKFLNFSFDVFFEALKVLPFPLHYELLAFEKNGETAGTYDELIMQIMEKKYDGVVGDVTIVAKRSKYIDFTMPFSESGVAMLVLAKNDDRQNMWIFLKPFSWELWLATGAAFIFTGFIVWFFEHRSNSEFRGTPKNQIGMALWFSFSTLVFAHREEVVNNWSRFVLIIWFFVVLIITQSYTASLASILTVQKLQPVFVDAEEIRTNNYFVGYPQNSFVKGLLIEKLGFNESKLKGYQGPEAYQQALSLGSNNGGVAAIFDEIVFINLFFAKYGCRKYQMVGPTYKTDGFAFAFPQNSPLVPYLSRAILNITENKTTFDGIKKKHFSSEVISTSEDQSSTTMAFGSPNLTLKSFGGLFIITLFTSLLPLIVHLFNKFIHSKRNIGQDFQQSLMEMMAELAKHFNKEECSLHDPPPNNLRMEEGSHDQSIIHNEEDL 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1588 774 Pfam Ligand-gated ion channel 666 701 IPR001320 GO:0015276|GO:0016020
Aed10g1588 774 MobiDBLite consensus disorder prediction 748 774 - -
Aed10g1588 774 Pfam Bacterial extracellular solute-binding proteins, family 3 377 665 IPR001638 -
Aed10g1588 774 PANTHER GLUTAMATE RECEPTOR 276 717 - -
Aed10g1588 774 PANTHER GLUTAMATE RECEPTOR 34 278 - -
Aed10g1588 774 Gene3D - 63 154 - -
Aed10g1588 774 Gene3D - 155 312 - -
Aed10g1588 774 Pfam Receptor family ligand binding region 56 276 IPR001828 -
Aed10g1588 774 Gene3D - 433 554 - -
Aed10g1588 774 Coils Coil 768 774 - -
Aed10g1588 774 Gene3D - 592 628 - -
Aed10g1588 774 SUPERFAMILY Periplasmic binding protein-like I 36 278 IPR028082 -
Aed10g1588 774 Gene3D - 629 664 - -
Aed10g1588 774 PIRSF IGluLR_plant 273 773 IPR017103 -
Aed10g1588 774 PIRSF IGluLR_plant 5 280 IPR017103 -
Aed10g1588 774 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 276 717 - -
Aed10g1588 774 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 278 - -
Aed10g1588 774 SMART GluR_14 327 666 IPR001320 GO:0015276|GO:0016020
Aed10g1588 774 CDD GluR_Plant 325 664 - -
Aed10g1588 774 SUPERFAMILY Periplasmic binding protein-like II 324 665 - -
Aed10g1588 774 Gene3D - 313 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1588 Aed-Chr10 20772930 20776965 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1588 276 749 Ion Channels AT2G29100 41.000 5.86e-104 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1588 K05387 - gmx:100800495 820.846