Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1587 ATGGAAGCTGTACGTCTTCATTATTATTCAGCTCTATGTCTGTCTTTTCTCCTAATTCTATGCCTATGGGAAAGACCCTTCATCATGGCAATACCAATACCAATAGGGGTAATTCTTGATTTGAACTCCCCAATTGGAAGTATGGCTAACAGCTGCATATGGATGGCATATCAGGATTTCTACGAACAGTATTCACATTTTCAAACCAGACTTGAGCTTCGAACAAGGGATTCTCAACGTGACATAGTTGAAGCAGCATATGCAGCCTCTGATTTGATAACGAAGGAAAAGGTGAAGGCAATCATTGGGCCTCAAACATCAGAACAAGCAAGATATGTGATAAACCTTGGGCACAAACATGGCATCCCCATTATCTCCTTCTCCGCCACAAGTCCATCTCTTTCCCCAACCCGCACTCCCACTTTCATACGAATGGCGCAAAACGATTCGTCTCAGGTGAAAGCCATAGCAGCCATTGCAGAAGCATATGGATGGCGAGAAATCGTCCTTGTATACGAAAACACCGAATACGGAAACGGTCTCGTCCCGCATCTCATAGATGCCTTAGACGCTGTCGACACAAAGGTACCTTACAGAAGCGTCGTTGACCCGAATTCTCAAGAGTCCCACATTCTGGAAGAGCTGGAGAATCTCAAGTTAAACCCGACAAGAATATTCCTTGTTCACATGACGGGTGAACACGGGTCGAAATTCTTTTCTACTGTGGAGAAAGCTGGAATGATGAGTGAAGGTTACGGATGGGTAGTCACCGAAGGGTTATCGGCGGAGTTGGATCCTTCTTCCGCACCTGAGAGAATGGGCAGCATGCAAGGCGTCTTGGGAGTGAGGTCAAAAGTAATGAGAAAAAATGAAAAGCTAGAAAGATTAGTTACGAAAAACACTAACACTTTCACCAGGATCACACAGTTCGGGTTGTGGGCTTACGATACGGTGTGGGCATTAGCGATGGCCGTGGAGAATTCAAATGAAACCAATGGAAACCTGTTAAAGGCAATCCTGGCTACGAAATTCCAAGGACTGTCTGGGTATGTTGAATTGAAGGGAGGACAGTTAGAGTCATCAGTGGTTGAAGTTTTCAATGTGGTCGGACATAAAGAGAGAATAATTGGATGTTGGAGCAATGAAAGAGGATTGTTCAAGAAACTAAGGGAACCGGTTTGGCCAGGTTACACAATGGACCAACCACCCAAGTTGAGATTTGGGGTCCCAGTGAGAAAGGGTTTCACTGAGTTTGTAAAAGTGGAAACTGTATCCAACGCCACTAAAGTTTCTGGTTTCGTTGTTGATGTGTTTTTAGAGGTGCTGAAGGCATTGCCTTTCTCGGTGTCGTACGAATTCGTCCCCTTCGAAATGTATGGCGCCCTTGCTGGACATGGGTTCGATGCTGAAGTTGGAGACATAACAATTGTTTATGACCGCACAAATAACACCAATTTCACGTTGCCTTATTTAGAATCTGCAGTGTCAATGGTTGTTTCAATGAAGCGTGACGAGAGACGAAACATGTGGGTGTTCTTGAAGCCTCTAAGTTGGGGTCTTTGGTTGACTACTGGTGCAACCTTGGTTCTCACCGGCTTCGTCGTGTGGTATCTGGAGCATCGTTCAAACAATGCAGTTTTTAGGGGAACCCTGAACCAGCAACTTGGCATTGTTTTCTGGTTTTCCTTCTCCACACTTGTCTTTGCTCAAAGGGAGAGATTAGTAAGTAACTGGTCCAGAGCAGTGCTAATTGTATGGATATTTGTAGTGCTCATCATCACCCAAAGTTACACTGCGAGTTTAACTTCAATGCTAACAATAGAAAGCCTGAGACCAGAATTCATTGACATAAAAGAGATAAAAAGGAACAACTACTCTGTGGGATATCAGAACCAATCCTTCGTGAAAATGACTTTAATAAATCAATTGGGATTGAGTGAGTCCCAGTTGAAGGCTTATATTACTCCCGAAGAGTATCATGAAGCACTTTCAAAAGGGACCAACAATGGTGGAGTAGCTGCTATCTTTGATGAAAGTCCTTATATCAATGTTTTTCTCTCCAAATATGACACTGGGTATGCTACGGTGGGACCGTTTTATAAAACAAATGGATTGGCCTTTGCATTTCCTCCACAATCACCTCTAGTGCCATATTTTTCGAGGGCAATCCTAAATGTCATTGAAGACGAAGACACGTTTGAAGGGATTAAAAACAAGTACTTCTCAACAAGAATGGTCTCCAATAAAGATCAAAATAGTGCCTCAATTTTAGACAGACAAGGTCTTACAGTGAAAAGCTTTGCAGGTCTTTTCATTATCACAACAATTGCTTCATTCCTATCATTCTCATTTTATGTGTTTACTTTCCTATACTCCCAATGGTCAACTTTGAGAAGCAATGTTCATTCTGAAGAACAAATAACCTTTTGGTCGTTGGTGGTTCGAATTGTAAAGCATTTTGATGAAAAGGATAGAAGTCAATCTAGAATACAACCAACAAGATTTCGCAGAGAGAAATTAAATAGTGAACCTTCACAGACATGTATGACGAATCTTCACAGCCTTTTTTACATACTGTGGCTATGGCCATTTCATCATCATCATGTGATGGCGGCGACGGCGAGGAGGAGGAAAGAGGTGGTTACGATACCAATAGGGGTAGTTCTTGATTTGAAGTCCCCAATTGGAAGAATGGCTAACAGCTGCATATGGATGGCATATCATGACTTCTACGAACAGCATTCACATTTTCAAACCAGACTTGATCTTCGAACAAGGGATTCTCAACGTGACACAGTCGAAGCAGCATATGCAGCCTCTGATTTGATAACGAAGGAAAAGGTGAAGGCAATTATCGGGCCTCAAACATCAGAACAAGCAAGATATGTGATAAACCTTGGGCACGAACATGGCGTCCCCATTATCTCCTTCTCCGCCACGAGTCCATCTCTTTCCCCAGCCCGCACTCCCACTTTCATACGAATGGCGCAAAACGATTCCTCTCAGGTGAAAGCCATAGCAGCCATTGCAGAAGCATACGGATGGCGAGAAATCGTCCTTGTATACGAAAACACCGAATACGGAAACGGTCTCGTCCCGCATCTCATAGATGCCTTAGACGCTGTCGACACAAAGGTACCTTACAGAAGCGTCGTTGACCCGAATTCTCAAGAGTCCCACATTCTGAAAGAGCTGGAGAATCTCAAGTTAAACCCGACAAGAATATTCCTTGTTCACATGACGGGAGAACACGGGTCGAAATTCTTTTCTACTGTGGAGAAAGCTGGAATGATGAGTGAAGGTTACGGATGGGTAGTCACCGAAGGGTTATCGGCGGAGTTGGATCCTTCTTCCGCACCTGAGAGAATGGACAGCATGCAAGGCGTCTTGGGAGTGAGGTCAAAAGTAATGAGAAAAAATGAAAAGCTAGAAAGATTAGTTACGAAAAACACCAACACTCTCACCACGATGACACCGTTCGGGTTGTGGGCTTACGATACGGTGTGGGCATTAGCCATTGCCGTGGAGAATTCAAATGAAGCTAATGGGAACCTGGTAAAGGCAATCCTGGCTACGAAATTCCAAGGACTGTCTGGGTATGTTGAATTGAAAGGAGGACAGTTAGAGTCGTCTGTGATTGAAGTTTTCAATGTGGTCGGACATAAAGAGAGAATAATTGGATGTTGGAGCAATGAAAGAGGATTGTTCAAGAAACTAAGGGAACCGGTTTGGCCAGGTTACACAATGGACCAACCACCCAAGTTGAGATTTGGGGTCCCAGTGAGAAAGGGTTTCACTGAGTTTGTAAAAGTGGAAACTGTATCCAACGCCACTAAAGTTTCTGGTTTCGTTGTTGATGTGTTTTTAGAGGTGTTGAAGGCATTGCCATTCTCGGTGTCGTATGAATTCGTCCCCCTTGAAAACTATGGCGCCCTTGCTGGACCTGTTACAAATAATTCCCTGAGGTTCGATGCTGGAGTTGGAGACGTAACAATTGTTTATGACCGCACAAATTACATCAATTTCACGTTGCCTTATTTAGAATCTGTGGTGTCAATGGTTGTTTCAATGAAGCGTGACGAGAGACGAAACATGTGGGTGTTCTTCAAGCCTCTAAGTTGGGGTCTTTGGTTGACTACTGGTGCAACCTTGGTCCTCACAGGCTACGTCGTGTGGTTCCTGGAGCACCGCTCAAACAATGCTGTCTTTAGGGGAACCCCGAACCAGCAACTTGGCATTAGATTAGTAAGTAATTGGTCCAGAGCAGTGCTAATTGTATGGATATTTGTAGTGCTCATCATCACCCAAAGTTACACTGCTAGTTTAACTTCAATGCTAACAATAGAAAGCCTGCGACCAGAATTCATTGACATAAAAGAGATAAAAAGGAACAACTACTCTGTGGGATATCAGAACCAATCCTTCGTGAAAATGATTTTAATAAATCAATTGGGATTGAGTGAGTCCCAGTTGAAGGCTTACAATACTCCGGAAGAGTATCATGAAGCACTTTCAAAAGGGACCAACAATGGTGGTGTAGCTGCTATCTTTGATGAAAGTCCTTATATCAATGTTTTTCTCTCCAAATATGACACTGGGTATGCTACGGTGGGACCGTTTTATAAAACAAATGGATTGGCATTTGCATTTCCTCCACAATCACCTCTAGTGCCATATTTTTCGAGGGCAATCCTAAATGTCATTGAAGACAAAGACACGTTTGAAGGGATTAAAAACAAGTACTTCTCAACAAGAATGGTCTCCAATAAAGATCAAAGTAGTGCCTCAATTTTAGACAGACAAGGTCTTACAGTGAAAAGCTTTGCAGGTCTTTTCATTGTCACAACAATTGCTTCATTCCTATCATTCTCATTTTATGTGTTTACTTTTCTATGCTCCCAATGGTCAACTTTGAGAAGCAATGTTCATTCTGAAGAACAAATAACTTTTTGGTCGTTGGTGGTTTGA 4968 0.43 MEAVRLHYYSALCLSFLLILCLWERPFIMAIPIPIGVILDLNSPIGSMANSCIWMAYQDFYEQYSHFQTRLELRTRDSQRDIVEAAYAASDLITKEKVKAIIGPQTSEQARYVINLGHKHGIPIISFSATSPSLSPTRTPTFIRMAQNDSSQVKAIAAIAEAYGWREIVLVYENTEYGNGLVPHLIDALDAVDTKVPYRSVVDPNSQESHILEELENLKLNPTRIFLVHMTGEHGSKFFSTVEKAGMMSEGYGWVVTEGLSAELDPSSAPERMGSMQGVLGVRSKVMRKNEKLERLVTKNTNTFTRITQFGLWAYDTVWALAMAVENSNETNGNLLKAILATKFQGLSGYVELKGGQLESSVVEVFNVVGHKERIIGCWSNERGLFKKLREPVWPGYTMDQPPKLRFGVPVRKGFTEFVKVETVSNATKVSGFVVDVFLEVLKALPFSVSYEFVPFEMYGALAGHGFDAEVGDITIVYDRTNNTNFTLPYLESAVSMVVSMKRDERRNMWVFLKPLSWGLWLTTGATLVLTGFVVWYLEHRSNNAVFRGTLNQQLGIVFWFSFSTLVFAQRERLVSNWSRAVLIVWIFVVLIITQSYTASLTSMLTIESLRPEFIDIKEIKRNNYSVGYQNQSFVKMTLINQLGLSESQLKAYITPEEYHEALSKGTNNGGVAAIFDESPYINVFLSKYDTGYATVGPFYKTNGLAFAFPPQSPLVPYFSRAILNVIEDEDTFEGIKNKYFSTRMVSNKDQNSASILDRQGLTVKSFAGLFIITTIASFLSFSFYVFTFLYSQWSTLRSNVHSEEQITFWSLVVRIVKHFDEKDRSQSRIQPTRFRREKLNSEPSQTCMTNLHSLFYILWLWPFHHHHVMAATARRRKEVVTIPIGVVLDLKSPIGRMANSCIWMAYHDFYEQHSHFQTRLDLRTRDSQRDTVEAAYAASDLITKEKVKAIIGPQTSEQARYVINLGHEHGVPIISFSATSPSLSPARTPTFIRMAQNDSSQVKAIAAIAEAYGWREIVLVYENTEYGNGLVPHLIDALDAVDTKVPYRSVVDPNSQESHILKELENLKLNPTRIFLVHMTGEHGSKFFSTVEKAGMMSEGYGWVVTEGLSAELDPSSAPERMDSMQGVLGVRSKVMRKNEKLERLVTKNTNTLTTMTPFGLWAYDTVWALAIAVENSNEANGNLVKAILATKFQGLSGYVELKGGQLESSVIEVFNVVGHKERIIGCWSNERGLFKKLREPVWPGYTMDQPPKLRFGVPVRKGFTEFVKVETVSNATKVSGFVVDVFLEVLKALPFSVSYEFVPLENYGALAGPVTNNSLRFDAGVGDVTIVYDRTNYINFTLPYLESVVSMVVSMKRDERRNMWVFFKPLSWGLWLTTGATLVLTGYVVWFLEHRSNNAVFRGTPNQQLGIRLVSNWSRAVLIVWIFVVLIITQSYTASLTSMLTIESLRPEFIDIKEIKRNNYSVGYQNQSFVKMILINQLGLSESQLKAYNTPEEYHEALSKGTNNGGVAAIFDESPYINVFLSKYDTGYATVGPFYKTNGLAFAFPPQSPLVPYFSRAILNVIEDKDTFEGIKNKYFSTRMVSNKDQSSASILDRQGLTVKSFAGLFIVTTIASFLSFSFYVFTFLCSQWSTLRSNVHSEEQITFWSLVV 1655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1587 1655 Gene3D - 1365 1483 - -
Aed10g1587 1655 Gene3D - 509 648 - -
Aed10g1587 1655 SMART GluR_14 1254 1584 IPR001320 GO:0015276|GO:0016020
Aed10g1587 1655 SMART GluR_14 404 743 IPR001320 GO:0015276|GO:0016020
Aed10g1587 1655 Gene3D - 401 508 - -
Aed10g1587 1655 Gene3D - 1251 1364 - -
Aed10g1587 1655 Gene3D - 1005 1177 - -
Aed10g1587 1655 Gene3D - 155 330 - -
Aed10g1587 1655 CDD PBP1_GABAb_receptor_plant 885 1239 IPR044440 -
Aed10g1587 1655 Pfam Bacterial extracellular solute-binding proteins, family 3 427 742 IPR001638 -
Aed10g1587 1655 Pfam Receptor family ligand binding region 905 1219 IPR001828 -
Aed10g1587 1655 Pfam Receptor family ligand binding region 55 369 IPR001828 -
Aed10g1587 1655 CDD GluR_Plant 404 741 - -
Aed10g1587 1655 PANTHER GLUTAMATE RECEPTOR 883 1632 - -
Aed10g1587 1655 PANTHER GLUTAMATE RECEPTOR 33 792 - -
Aed10g1587 1655 Pfam Bacterial extracellular solute-binding proteins, family 3 1277 1583 IPR001638 -
Aed10g1587 1655 Pfam Ligand-gated ion channel 743 777 IPR001320 GO:0015276|GO:0016020
Aed10g1587 1655 SUPERFAMILY Periplasmic binding protein-like II 401 742 - -
Aed10g1587 1655 CDD PBP1_GABAb_receptor_plant 35 389 IPR044440 -
Aed10g1587 1655 SUPERFAMILY Periplasmic binding protein-like I 882 1230 IPR028082 -
Aed10g1587 1655 SUPERFAMILY Periplasmic binding protein-like II 1251 1583 - -
Aed10g1587 1655 SUPERFAMILY Periplasmic binding protein-like I 32 380 IPR028082 -
Aed10g1587 1655 Gene3D - 55 154 - -
Aed10g1587 1655 Gene3D - 905 1004 - -
Aed10g1587 1655 CDD GluR_Plant 1254 1582 - -
Aed10g1587 1655 Pfam Ligand-gated ion channel 1584 1618 IPR001320 GO:0015276|GO:0016020
Aed10g1587 1655 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 883 1632 - -
Aed10g1587 1655 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1587 Aed-Chr10 20755532 20772989 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1587 6 824 Ion Channels AT2G29120 40.363 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1587 K05387 - gmx:100799966 1252.65