Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1585 ATGCATGTTGTGGTAGAGAAAGGGTTGCTTGTGATTCGAAGGAGGAATAGTTCCTACTACAATAATGAAACTGGTCCAAACTGCTCCTTCTTGGTGAAACAGTTCGAAAGGGGCACTCAGAGTGTGGAATTCAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTTTGGTTTAGTAAACAAAATAACTGTCACCATTCAGGATGCTGGAAAGGATCACTGTGTTGCTTGCAACAACCAAGTAGCAAATAACTACTATAGGACTGATCTCGAAAAGGCAGCGTTGGCAAGGTTGAGAGTTGCAAAGTCTGGTGTGAAGAAGAGGAATAGACAAGCTGTGAAAAGTTGGGGAAATGAAACTCCTTTGTTATTGCTTGATATTGAGAATTGGTTGGTTATCTTGAGGAAATACTTAATTTGA 432 0.4074 MHVVVEKGLLVIRRRNSSYYNNETGPNCSFLVKQFERGTQSVEFSREPNNLYNLNTFKYFGLVNKITVTIQDAGKDHCVACNNQVANNYYRTDLEKAALARLRVAKSGVKKRNRQAVKSWGNETPLLLLDIENWLVILRKYLI 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1585 143 Pfam Ribosomal L28e protein family 27 112 IPR029004 -
Aed10g1585 143 PANTHER 60S RIBOSOMAL PROTEIN L28 80 121 IPR002672 GO:0003735|GO:0005840|GO:0006412
Aed10g1585 143 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 80 121 - -
Aed10g1585 143 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 27 79 - -
Aed10g1585 143 Gene3D - 24 125 - -
Aed10g1585 143 PANTHER 60S RIBOSOMAL PROTEIN L28 27 79 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1585 Aed-Chr10 20700345 20701220 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1585 27 116 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 48.438 1.51e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1585 K02903 - gmx:100500189 125.176