Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1562 ATGGCGGCTGCAATACTTGGAGCCAGAAGGGCCAAGAAACGTTACATTGGGGTGAGGCAAAGGCCTTCAGGGAGATGGGTGGCTGAAATCAAAGACACCATTCAGAACATTAGGGTTTGGTTAGGCACTTATGACACTGCTGAAGATGCTGCCAGGGCTTATGATGAAGCAGCACGTTTGCTTCGTGGTGCCAACACTCGCACCAACTTCTTTCATAATTCACAAGATTCTTCTCATCATCTTGCTCTTCCTCCTAAGATTGCCAAACTCCTCCTTCTTAGGCTCAAAGCTAGAAACATGACCTCTCCATCATCATGCATGGTTACTACTCCTTCCACTTTTCCTAGTAGTAACCACTATGAACAAGAAACCAAACCCGAACCTGAACCCGAGCCCGGTTTTTATAACCAAATAGAGGAAGAACCCTATTATGGGAATTATTTAGATATGGTAGGAAATGGGGTTGTTGAAGAGAGTTATAATTATTATGGTGCTAGTAATTATAGTTCTTCTTCAGCCATAACTACTTGTTGTGACTATAGTTGTGGTACCAATGAAGAAAATTCTAATCTAGAGGGTAGTAGGGAGGAATTTCATTGTGCTGATAATAATATTAATGTTTATGAAGAAAACAACAAGATTGTGAGTGGTAAAGGAGAGTTTGAAGATCACTGTGATGTTGGATTAATCAGTGATGATTTTCAGTTTTTGGACAGTGGTGGTGGATCATTTAGTAATTATCCTTTTTCTCCATTTGAGATAGCAGAGGAGATGGTGGGAGCAATAGAGGAAGAGAAATTATATGATGATGTTGATCATGACTCACAGTTACTTAGAGAATCTTTCAGGAATATGAAGTATGAACGTAGATTCTCGGCTTGTCTTTACACCCTAACTGGAGTGTCTGAGTGTTTGAGGCTACAAGTTGGACCAGAAAATGGAAAGGAATTGGAAAAGTTTTCAGGCATTGACTAG 975 0.4031 MAAAILGARRAKKRYIGVRQRPSGRWVAEIKDTIQNIRVWLGTYDTAEDAARAYDEAARLLRGANTRTNFFHNSQDSSHHLALPPKIAKLLLLRLKARNMTSPSSCMVTTPSTFPSSNHYEQETKPEPEPEPGFYNQIEEEPYYGNYLDMVGNGVVEESYNYYGASNYSSSSAITTCCDYSCGTNEENSNLEGSREEFHCADNNINVYEENNKIVSGKGEFEDHCDVGLISDDFQFLDSGGGSFSNYPFSPFEIAEEMVGAIEEEKLYDDVDHDSQLLRESFRNMKYERRFSACLYTLTGVSECLRLQVGPENGKELEKFSGID 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1562 324 Gene3D AP2/ERF domain 13 72 IPR036955 GO:0003700|GO:0006355
Aed10g1562 324 MobiDBLite consensus disorder prediction 103 133 - -
Aed10g1562 324 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
Aed10g1562 324 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Aed10g1562 324 MobiDBLite consensus disorder prediction 103 121 - -
Aed10g1562 324 CDD AP2 13 70 IPR001471 GO:0003700|GO:0006355
Aed10g1562 324 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Aed10g1562 324 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Aed10g1562 324 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 320 - -
Aed10g1562 324 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 1 320 - -
Aed10g1562 324 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Aed10g1562 324 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1562 Aed-Chr10 20515448 20516422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1562 12 91 AP2-EREBP Transcription Factor Family AT5G19790 65.000 1.17e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed10g1562 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1562 K09286 - gmx:100793940 347.051