Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1559 ATGAGTTCGGGTAGCAGCAACAGTAGTGAGAAAGAGAAGGAGAAGGAGAAGCAGAGGGTGAGTCGCACGTCACTGATACTGTGGCACGCGCACCAAAACGACGCCGCAGCGGTGCGGAAGCTCCTCCAGGAGGATCCCACTCTGGTCAAGGCCAGGGACTACGACAACCGCACCCCGCTCCACGTGGCGGCCCTCCACGGCTGGATCGACGTCGCCACGTGTCTCCTCGAGTTCGGCGCCGACGTCAACGCGCAAGATCGCTGGAAAAATACCCCTCTGGCGGATGCGGAGGGAGCTAAGAAGAGTAATGTGATCGAGCTTTTGCAATCGAAGGGAGGCTCGTCTTATGGGCAAAATGGAAGCCATTTTGAGCCGAAGCCGGTTGCGCCGCCGTTGTCAAACAAGTGTGATTGGGAAATCGAGCCTACGGAGCTCGACTTCTCCAACTCCACAAGAATCGGAAAGGGGTCTTTTGGTGAGATTTTAAAAGCCCATTGGCGTGGAACACCAGTTGCTGTTAAACGTATTCTTCCATCTCTTTCAGAGGATAGATTGGTGATTCAGGACTTCAGGCATGAGGTCAATTTGTTAGTGAAGCTTCGACACCCAAATATAGTTCAGTTTCTTGGAGCTGTTACTGACAGGAAGCCCCTTATGCTAATAACTGAGTATCTAAGAGGGGGTGATCTTCACCAGTACCTCAAAGAAAAAGGTCCACTTAGTCCTGCAACAGCTATCAACTTTTCCATGGATATTGTCAGAGGAATGGCCTATCTTCACAACGAACCAAATGTTATAATTCATCGAGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATTCTAGTGCTGACCATTTAAAAGTTGGAGATTTTGGATTGAGTAAGCTTATCACAGTCCAGAGTTCTCATGATGTATACAAGATGACTGGTGAAACTGGGAGCTACCGCTACATGGCTCCTGAAGTTTTCAAACATCGGAGATATGAGAAGAAGGTTGATGTGTACTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCACCTTTTGCAAGTTGTGAACCTTATGAAGGCGCAAAATACGCTGCTGAGGGACACAGGCCTCAATTTCGGGCAAAGGGTTATACCCCTGAATTGCAAGAGTTAACAGAGCAGTGCTGGGCTCATGACATGAATCAGAGACCATCCTTCATAGAGATCCTTAAACGGCTGGAAAAGATCAAGGAGAATTTACCTGCAGATCATCACTGGCACTTGTTTGCTTCATAA 1272 0.4788 MSSGSSNSSEKEKEKEKQRVSRTSLILWHAHQNDAAAVRKLLQEDPTLVKARDYDNRTPLHVAALHGWIDVATCLLEFGADVNAQDRWKNTPLADAEGAKKSNVIELLQSKGGSSYGQNGSHFEPKPVAPPLSNKCDWEIEPTELDFSNSTRIGKGSFGEILKAHWRGTPVAVKRILPSLSEDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTDRKPLMLITEYLRGGDLHQYLKEKGPLSPATAINFSMDIVRGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLITVQSSHDVYKMTGETGSYRYMAPEVFKHRRYEKKVDVYSFAMILYEMLEGEPPFASCEPYEGAKYAAEGHRPQFRAKGYTPELQELTEQCWAHDMNQRPSFIEILKRLEKIKENLPADHHWHLFAS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1559 423 SUPERFAMILY Protein kinase-like (PK-like) 139 418 IPR011009 -
Aed10g1559 423 Pfam Protein tyrosine and serine/threonine kinase 150 405 IPR001245 GO:0004672|GO:0006468
Aed10g1559 423 SMART serkin_6 147 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1559 423 SUPERFAMILY Ankyrin repeat 26 129 IPR036770 -
Aed10g1559 423 SMART ANK_2a 55 84 IPR002110 GO:0005515
Aed10g1559 423 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 415 - -
Aed10g1559 423 Gene3D Phosphorylase Kinase; domain 1 130 226 - -
Aed10g1559 423 Gene3D Transferase(Phosphotransferase) domain 1 227 418 - -
Aed10g1559 423 PRINTS Tyrosine kinase catalytic domain signature 376 398 IPR001245 GO:0004672|GO:0006468
Aed10g1559 423 PRINTS Tyrosine kinase catalytic domain signature 260 278 IPR001245 GO:0004672|GO:0006468
Aed10g1559 423 PRINTS Tyrosine kinase catalytic domain signature 222 235 IPR001245 GO:0004672|GO:0006468
Aed10g1559 423 ProSiteProfiles Ankyrin repeat region circular profile. 55 87 - -
Aed10g1559 423 CDD STKc_MAP3K-like 153 405 - -
Aed10g1559 423 ProSitePatterns Protein kinases ATP-binding region signature. 153 174 IPR017441 GO:0005524
Aed10g1559 423 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 9 415 - -
Aed10g1559 423 PIRSF ILK 1 423 - -
Aed10g1559 423 Pfam Ankyrin repeats (3 copies) 22 86 IPR002110 GO:0005515
Aed10g1559 423 Gene3D - 2 129 IPR036770 -
Aed10g1559 423 ProSiteProfiles Ankyrin repeat profile. 55 87 IPR002110 GO:0005515
Aed10g1559 423 MobiDBLite consensus disorder prediction 1 21 - -
Aed10g1559 423 ProSiteProfiles Protein kinase domain profile. 147 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1559 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1559 Aed-Chr10 20497752 20503646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1559 5 423 MAP Kinase Kinase Kinase AT1G14000 83.532 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Aed10g1559 PK_Tyr_Ser-Thr 1.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1559 - - gmx:100793237 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1559 10 20497752 20503646 Aed10g1559 10 20497752 20503646 ECH