Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1546 ATGGGTAGGTCACCATGCTGTGAGAAAGTGGGGTTGAAGAAAGGGCCATGGACTCCGGAGGAAGACCAGAAACTCATGGCTTACATTGAAGAGTTTGGCCACGGAAGCTGGCGTGCTTTGCCTGCCAAAGCTGGACTTCAAAGATGTGGGAAGAGCTGCAGGCTAAGGTGGACTAACTACCTTCGACCAGACATAAAAAGAGGAAAGTTCAGCTTGCAGGAGGAGCAAACAATCATTCAACTCCATGCCCTTCTTGGGAACAGATGGTCAGCCATAGCAGCTCAACTTCCCAAGAGAACCGACAATGAGATCAAGAACTACTGGAACACACACCTGAAGAAGAGGCTAACCCGAATGGGGATAGACCCAACGACCCACAAGCCCAAGACCGACGCGCTTGGTGGCTCAGGTGGCGGCCAATCGAGGGACTCAGCCAACCTGAGCCACATGGCGCAGTGGGAGAGCGCTCGGCTCGAAGCCGAGGCACGGCTCGTGAGAGAGTCGAAGCTGCAAGTTGTCCAGAACAACCTTGGATCCTGCTCCAACAACACACAACCTGCGAGGCTTGTTCTCAACAAGATCACGACGCAGCAGCCGTCGCTACCGCCGTGCCTCGACATCCTCAAGGCGTGGCAGAGCTCGTGGAACAAGCCGCCACAGCCAATAACGAAGGAAAGCAACAACACCAAGATCATGCATAGCATGTATGCCATGATGCTTTCCACTGATGAGAGTACTCTAGAGTCTCCAACGTCCACGTTGTGCTTCCCAGGAACAACAACAACAACAACAATGCTTCCTATCTCCAATAACAACAACATTGGAGTGCTGTTCAATGACGAAGACGACAACAACAACATGTTTCCTCTCGCAAACGCCATCGACGACAGCAGTGTGTTCATGAAAGACCACGCCGCCGCAATGCTGCATTTGCAAGACGACGATATCATGGCGGCGCTGGAGGCATTTAGAGCCACCACAGGCTACGATAACAATAACAATATTAATAACAATGTTGTTGTTGGTCCTCGTTCACTCTCCAACGGTGGTGTGGTCGTCCTCGAAGGACTCAACAACAATAATCACAAAGATGATAATGACAACAATAATAATGCCTTGACGGTTTACGACTCCAACAACGACAACTTGTGCTCGGAGGAAGTGGAGAGCATGGCAATCATCAACGGGGATGGAAGCCTCTGCAACGTGAACCTCGATGAGAATAATAAGCATTACTGGAACAACATATTCAATTTGGTGAATGATCCCTTGTCTGGTTCCTCTGTCTTCTGA 1293 0.5027 MGRSPCCEKVGLKKGPWTPEEDQKLMAYIEEFGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDALGGSGGGQSRDSANLSHMAQWESARLEAEARLVRESKLQVVQNNLGSCSNNTQPARLVLNKITTQQPSLPPCLDILKAWQSSWNKPPQPITKESNNTKIMHSMYAMMLSTDESTLESPTSTLCFPGTTTTTTMLPISNNNNIGVLFNDEDDNNNMFPLANAIDDSSVFMKDHAAAMLHLQDDDIMAALEAFRATTGYDNNNNINNNVVVGPRSLSNGGVVVLEGLNNNNHKDDNDNNNNALTVYDSNNDNLCSEEVESMAIINGDGSLCNVNLDENNKHYWNNIFNLVNDPLSGSSVF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1546 430 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 423 - -
Aed10g1546 430 CDD SANT 69 112 IPR001005 -
Aed10g1546 430 CDD SANT 16 61 IPR001005 -
Aed10g1546 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed10g1546 430 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed10g1546 430 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed10g1546 430 Gene3D - 13 66 - -
Aed10g1546 430 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aed10g1546 430 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed10g1546 430 MobiDBLite consensus disorder prediction 118 146 - -
Aed10g1546 430 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 423 - -
Aed10g1546 430 SMART sant 66 114 IPR001005 -
Aed10g1546 430 SMART sant 13 63 IPR001005 -
Aed10g1546 430 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed10g1546 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed10g1546 430 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1546 Aed-Chr10 20348211 20350251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1546 1 256 MYB Transcription Factor Family AT3G01140 63.707 4.07e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed10g1546 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1546 K09422 - gmx:100809025 668.692