Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1545 ATGGCAGAAGAAGAAGAGCACTTGCAAGAGCTGAGATCCAAAGCCACAGAGCTTTTCCTGAGAGAAGAATGGAAACCCTCGATCGAAGCCTATTCCCACTTCATCACTCTCTGCACCCAAACCCTCTCAAATTCTCATCACTTTCCAAACCAAAAGCTTCGCAGATCTCTGTGCATAGCCCTATGCAACCGCGCAGAAGCGAGGTCCAAGCTAAAGGACTTCCACAACGCGCTTCGCGACTGCGACCACGCTCTGGAACTCGACGCCACACATTCCAAGACCCTTTTGTGCAAAGGCAAGATCTTGCTGTGCCTCAGTCGCTATTCCTCTGCCCTCGAGTGCTTCCGAACCGCCACCGTTGACGGGAGCACCGAAAACGCAAATGGGTACTTGGAAAGGTGCAAAAGTTTGGAGCTTTTGTCGAAAACTGGCTGCTTGGACCTCTCGGATTGGGTCTCGAATGGGTTCAAAGGGAAGGCTCCGGAGCTTGCAGAACACGTTGGTGCTGTGGAGATTAGAAAGTCCGAGATCAGTGGGAGAGGGTTGTTTGTGACAAAAAATGTTGATTCTGGGTCGGTGGTTTTGGTCACAAAGGCAATTGCAATGGAGAGGAGTATCATAATGGGAGGTGTTCAGGATCTGAGTGAGGAAGCACAGTTGGCAATGTGGAAGAGTTTCATAGACAAGGTTTTTGAGGTTGTCGGGAAGTGTAACAAGACAAAGGGTTTGGTAAAAAGGTTGTCTTGTGGTGAGAATGAGGATGAGCTTGATGTGCTTGATGTGGGGCTCTTTAGGCCTGAGAGTGGTTTTGATGATGAAATTGGTGATGAAATTGATATGGTTAAGTTGGTTGGGATATTGGATGTGAATTCACTCACTGAGGATGCTGTTTTCTCAGCCAATGTGTTGAGGAAGGGTAGTGATTGTTATTATGGTGTTGGGTTGTGGTTGTTGCCTTCATTTGTGAACCACTCATGTGTTCCCAATGCAAGGAGGTTGCATGTTGGGGACTACTTGGTGGTTCATGCCTCCAAGGATTTGAAGGCTGGTGAGGAGGTTACCTTTGCATACCTTGACCCTTTGTGTGGATTGAGCAAGAGGAGGGAGATGTCACTGAATTGGGGGATCCATTGCAAGTGCAAGAGGTGTAGGTTTGAAGGGGAAGTGTTTGGGAAGCAAGAGATAAGAGAGATTGAGATTGGTCTTGAGAAAGGAATGGATGTGGGGGGTGTGGTGTACAAGCTTGAGGAGCAGATGAAGAGAATGAAGGTTAGGGGAAAGGAGAAAGGGTATTTGAGGGCTTCATTTTGGGAAGCATATTCTGAGGCTTATAGGTCTGAGAGGGCTATGAAGAGGTGGGGGAGGAGGATTCCTACAATGGAAGCTGTGGTTGATAGCATCAGTGATGTTGTGGGAGGGGATCAGAGGTTGCTTAAGATCATGGTGGAGGAGGAGTTGAAGAAGAAAAACAACAGTGCTGGAGGAGTTGTTTCTGAGAGGGACAAGGTTTTCAAGATGGCAAGAGATGTGTTTGGGAAGGTTGTGAAAAAGCAAGCAATGAAGAAACTTCTTGAACTCTGCATTGGTGGTGATTGA 1596 0.4749 MAEEEEHLQELRSKATELFLREEWKPSIEAYSHFITLCTQTLSNSHHFPNQKLRRSLCIALCNRAEARSKLKDFHNALRDCDHALELDATHSKTLLCKGKILLCLSRYSSALECFRTATVDGSTENANGYLERCKSLELLSKTGCLDLSDWVSNGFKGKAPELAEHVGAVEIRKSEISGRGLFVTKNVDSGSVVLVTKAIAMERSIIMGGVQDLSEEAQLAMWKSFIDKVFEVVGKCNKTKGLVKRLSCGENEDELDVLDVGLFRPESGFDDEIGDEIDMVKLVGILDVNSLTEDAVFSANVLRKGSDCYYGVGLWLLPSFVNHSCVPNARRLHVGDYLVVHASKDLKAGEEVTFAYLDPLCGLSKRREMSLNWGIHCKCKRCRFEGEVFGKQEIREIEIGLEKGMDVGGVVYKLEEQMKRMKVRGKEKGYLRASFWEAYSEAYRSERAMKRWGRRIPTMEAVVDSISDVVGGDQRLLKIMVEEELKKKNNSAGGVVSERDKVFKMARDVFGKVVKKQAMKKLLELCIGGD 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1545 531 SMART set_7 168 364 IPR001214 GO:0005515
Aed10g1545 531 Gene3D Tetratricopeptide repeat domain 2 142 IPR011990 GO:0005515
Aed10g1545 531 Coils Coil 1 21 - -
Aed10g1545 531 Gene3D SET domain 281 387 IPR046341 -
Aed10g1545 531 SUPERFAMILY TPR-like 7 118 IPR011990 GO:0005515
Aed10g1545 531 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 495 - -
Aed10g1545 531 SMART tpr_5 58 91 IPR019734 GO:0005515
Aed10g1545 531 SMART tpr_5 92 125 IPR019734 GO:0005515
Aed10g1545 531 CDD SET_SMYD 310 383 - -
Aed10g1545 531 SUPERFAMILY SET domain 168 381 IPR046341 -
Aed10g1545 531 ProSiteProfiles SET domain profile. 168 358 IPR001214 GO:0005515
Aed10g1545 531 Pfam SET domain 179 357 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed10g1545 SET 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1545 - - gmx:100812233 897.501