Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1539 ATGAGGAACAACTTTGAGGAACACCCCAACAACAGTGATGACGGTGTGGCTGATCATGAGGGTAACAAAGGCTCTGATAATAGCAGTGATGATGATGATGGTGGTGGTGAAGACAGTGACAAAGTTAACCATAATGCTAATAACTTTAACGATGATGAGAACAACCCTAATGAGAATAATTCTAACAGTGGTGGCTCCGGTGGCCACTCCAAGCTCTGTGCTAGAGGGCATTGGAGACCAGCAGAAGATTCCAAGCTCAAGGAGCTTGTTGCTCTCTATGGCCCTCAGAACTGGAACCTCATTGCTGAGAAGCTAGAAGGAAGATCAGGTAAGAGTTGTAGGCTGAGATGGTTCAACCAGCTGGATCCAAGGATAAACAGGAGGGCATTCAGTGAGGAAGAGGAAGAGAGGCTAATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCAGGAAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATTATGGCTAGAAAGTACAGAGAACAGTCCAGTGCCTACAGGAGGAGGAGGCTCACCCAACAATCTGTTTACAGAAGAGGAGTTGAGGAAATAATCAACACAACAGTAACAACAACAACAGGTAGCAGCATTGTCTCAAGAAGAGACACAACCACTGCAGGGACAGAACAACAACAACAAGCACCACCATCACCCTATTGTTTCATCAACAGCAACAACATTAACATGCCTAGTTTTCCTTATGCTGCTGCTGCACCATTCCATCATGGAGTAGTGGCTGCTGCTGCCGCTGGTGCTGCTGCTACTGATCTGTGCTTATTAAATGGATCACCCCACATGGCTTCTTCAAAAGAAGCAATCTCAACCACCAAGATGGACCCTCCCCATAATATTGCTGCTGCCTTGTATCCTCAACAAACACCACTTGATTTCTTCTCAGCACAGATATTAGGCCACAGTGAAGCCTCACTATCATCAGTGGCAGAACACAGAGATCAAGCTACCCCAGATGCAGCAGCAATTCCACCTTCATTTATTGATTTTCTTGGAGTAGGAGCCACATAG 1074 0.4581 MRNNFEEHPNNSDDGVADHEGNKGSDNSSDDDDGGGEDSDKVNHNANNFNDDENNPNENNSNSGGSGGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLTQQSVYRRGVEEIINTTVTTTTGSSIVSRRDTTTAGTEQQQQAPPSPYCFINSNNINMPSFPYAAAAPFHHGVVAAAAAGAAATDLCLLNGSPHMASSKEAISTTKMDPPHNIAAALYPQQTPLDFFSAQILGHSEASLSSVAEHRDQATPDAAAIPPSFIDFLGVGAT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1539 357 ProSiteProfiles Myb-like domain profile. 122 172 IPR001005 -
Aed10g1539 357 MobiDBLite consensus disorder prediction 1 30 - -
Aed10g1539 357 PANTHER MYB PROTEIN-RELATED 317 357 - -
Aed10g1539 357 PANTHER MYB TRANSCRIPTION FACTOR 3 317 - -
Aed10g1539 357 MobiDBLite consensus disorder prediction 1 74 - -
Aed10g1539 357 Gene3D - 128 196 - -
Aed10g1539 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 121 IPR017930 -
Aed10g1539 357 SUPERFAMILY Homeodomain-like 75 168 IPR009057 -
Aed10g1539 357 PANTHER MYB PROTEIN-RELATED 3 317 - -
Aed10g1539 357 Gene3D - 75 126 - -
Aed10g1539 357 SMART sant 74 123 IPR001005 -
Aed10g1539 357 SMART sant 126 174 IPR001005 -
Aed10g1539 357 MobiDBLite consensus disorder prediction 212 234 - -
Aed10g1539 357 PANTHER MYB TRANSCRIPTION FACTOR 317 357 - -
Aed10g1539 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 176 IPR017930 -
Aed10g1539 357 Pfam Myb-like DNA-binding domain 75 121 IPR001005 -
Aed10g1539 357 Pfam Myb-like DNA-binding domain 127 170 IPR001005 -
Aed10g1539 357 CDD SANT 129 169 IPR001005 -
Aed10g1539 357 ProSiteProfiles Myb-like domain profile. 75 121 IPR001005 -
Aed10g1539 357 CDD SANT 78 119 IPR001005 -
Aed10g1539 357 MobiDBLite consensus disorder prediction 48 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1539 Aed-Chr10 20218113 20219805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1539 52 187 MYB Transcription Factor Family AT1G69560 80.435 4.96e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed10g1539 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1539 K09422 - gmx:100810632 388.267