Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1522 ATGAGCGATCATCTGGTGTTGTTCATGGACCGCCTGATGCGGCCCGCGCCGGTGATCGAACCGTTGGCCCAACAACCTCCCGAGCCCGCCACGCCCGTGCACGAGGCGGCTGCCGGGCCCTCCCGTCCGTCTCCGGCGGAGGACGACGAAGACGACGAGGACGCGCCGCTGCTGCAGCTGGCGGAGTGTCGCATTTGCCAAGAGGAGGACAGCATCACCGGTCTGGAGAACCCCTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGTGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAATTTGTGAGATATGTCATAAGCCTTATGAACCTGGTTATACTGCCCCACCACCTCGTCCTCAGCCTGAAGAAACTACCATTGATATAGGTGGAGGTTGGACAATCTCTGGCACACCGTTGGACTTGCGTGATCCCCGGCTCTTGGCAATTGCAGAGGCTGAACGGTCTATAGCAACATTGACTATGCTATTATTAATGGCCCTTTTACTCTTAAGGCATGCACTTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCGACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGTTATGTCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAAAGACAAGAGGCTGCGGCACTGGCAGCAACCCAAGTTGCTTTTGTTTTACAATCCGGGCAGCGTAGGGGTCTGCAGTTTGCAATAGCACCAGGACCAACAATGAATACACACCACCACCACCAAGAACAAGTGTAA 801 0.5268 MSDHLVLFMDRLMRPAPVIEPLAQQPPEPATPVHEAAAGPSRPSPAEDDEDDEDAPLLQLAECRICQEEDSITGLENPCSCSGSLKYAHRKCVQRWCNEKGDIICEICHKPYEPGYTAPPPRPQPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERSIATLTMLLLMALLLLRHALSVTDSDAEDDPSTFFSLFLLRAAGFLLPCYVMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPTMNTHHHHQEQV 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1522 266 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 164 250 IPR033275 -
Aed10g1522 266 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 159 IPR033275 -
Aed10g1522 266 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 164 250 - -
Aed10g1522 266 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 159 - -
Aed10g1522 266 Pfam Protein of unknown function (DUF3675) 114 161 IPR022143 -
Aed10g1522 266 Pfam Protein of unknown function (DUF3675) 165 214 IPR022143 -
Aed10g1522 266 Pfam RING-variant domain 63 108 IPR011016 GO:0008270
Aed10g1522 266 CDD RING_CH-C4HC3_MARCH 63 109 - -
Aed10g1522 266 ProSiteProfiles Zinc finger RING-CH-type profile. 55 115 IPR011016 GO:0008270
Aed10g1522 266 SUPERFAMILY RING/U-box 62 113 - -
Aed10g1522 266 SMART ringv_2 62 109 IPR011016 GO:0008270
Aed10g1522 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 117 IPR013083 -
Aed10g1522 266 MobiDBLite consensus disorder prediction 21 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1522 Aed-Chr10 20070044 20074155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1522 51 109 C3H Transcription Factor Family AT2G37950 41.935 1.14e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1522 - - gmx:100817542 429.098