Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1519 ATGTGGCCGGGGCCGTCCAGGTCGTTCAACTACAACCTGGCGCCTCACCACGACATCTTCGTGGTGGCGGCGCCAGCTTCCTCCTTCCACCACCACCATCACCACAACCACCACAACGACGCCGTTTTGTCGGATCCAAACAGCAACAACAATTCTAACAGCAACAACGCTGCAACTGCACTCGGCGTCAACGTTTTCCCTCTCCTAACCGCCACGCCGTGCCTCGAGAGCGAGGGCATAATGGGAAACATCGACCACAACCACCGTAACAGAATTCAGTTATGGCAGGAGCACGAGTCTCCTCCATCGCAACAGCAGCACGAGCGTGACACGTGCGGGGACGGGGGTTTAGGCGGGACTGGCACGTGCCAGGACTGTGGGAACCAGGCGAAGAAGGATTGCAGCCACAGGAGGTGCAGGACGTGTTGCAAGAGTAGGGGTTTCGATTGCTCCACGCACGTGAAGAGCACGTGGGTCCCCGCGTCGCGCCGGAGGGAGAGGCAGCTCATGACGGTGACGGCCGCAGCGACAACAACAGCGGCGGTTGGGTCCAGTGGGGCCACTTCCGGTTCCAAGAAACCTAGGCTCGTTGCTTCCCAAACCACCACTACTTCGCCTACTTCAACATCTAATAACACTAACACCACTCCTCCTAGGAGCTTTGACACTGGTTCTAGCCACCAAGATATGGGTTTCAAGGATTCACTACCTTGCCAATTGCGTGCACCAGCAGTGTTCAAGTGTGTTCGTGTGACAGCAGTGGACGATGGTGGAGAAGATGAGTATGCTTACCAAGCTGTTGTAAAGATTGGTGGCCATGTCTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAGGACAAATCAGAAGGGTACCCTAATTTATCTGAATTGCATTTGGGTGGTGGAAATGTTGCAAGTGATGGTGGTAGAAATGGGGTTTCATCTTCATCTCCAATGGTGGATCCTTCTCATCATGATGTCTATGGAGCAGGTGGAGGAGGAGGGTTATTACTTGGAGGAGGTTCATCAAACTATGGTAATACAATAAATTAA 1053 0.5328 MWPGPSRSFNYNLAPHHDIFVVAAPASSFHHHHHHNHHNDAVLSDPNSNNNSNSNNAATALGVNVFPLLTATPCLESEGIMGNIDHNHRNRIQLWQEHESPPSQQQHERDTCGDGGLGGTGTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPASRRRERQLMTVTAAATTTAAVGSSGATSGSKKPRLVASQTTTTSPTSTSNNTNTTPPRSFDTGSSHQDMGFKDSLPCQLRAPAVFKCVRVTAVDDGGEDEYAYQAVVKIGGHVFKGFLYDQGVEDKSEGYPNLSELHLGGGNVASDGGRNGVSSSSPMVDPSHHDVYGAGGGGGLLLGGGSSNYGNTIN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1519 350 MobiDBLite consensus disorder prediction 30 56 - -
Aed10g1519 350 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 122 164 IPR006510 -
Aed10g1519 350 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 18 349 - -
Aed10g1519 350 MobiDBLite consensus disorder prediction 179 228 - -
Aed10g1519 350 Pfam Domain of unknown function (DUF702) 121 285 - -
Aed10g1519 350 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 236 284 IPR006511 -
Aed10g1519 350 MobiDBLite consensus disorder prediction 42 56 - -
Aed10g1519 350 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 18 349 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1519 Aed-Chr10 20009118 20012636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1519 2 322 C2H2 Transcription Factor Family AT5G12330 49.711 1.58e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Aed10g1519 DUF702 9.8e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1519 - - gmx:100816514 506.138