Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1518 ATGGTGTATGTGAAGGCTCAGAAATCGAGAGCCTACTTCAAGAGGTATCAAGTCAAGTTCAAAAGAAGAAGAGAGGGAAAAACCGATTACCGTGCCAGGATCCGGTTGATTAACCAGGATAAGAATAAGTACAATACCCCGAAATACAGATTCGTGGTTCGTTTTACTAATAAGGATATCACAGCACAAATCATATCTGCTAGCATTGCTGGTGATATTGTTCTTGCTGCGGCATATTCACATGAGCTGCCTCAGTATGGTCTTGAAGTAGGACTTACAAATTATGCTGCAGCCTATTGCACTGGGCTATTGTTGGCCCGAAGAGTCCTCAAGACACTTGAAATGGATGATGAGTATGAAGGAAATGTTGAGGGAGCTCTGGATGGTGGTTTGGATATTCCACACAGTGACAAGAGGTTTGCTGGTTTTGATAAGGAGAAGAAGCAGCTCGATGCGGAGGTTCATCGCAAATATGTCTTTGGTGGACATGTCGCTGCCTATATGAAGGCATGGGAAATATTTTATTCTATCTTAGCAGAAGATGAACCAGAGAAATACCAGACACACTTCAGCCAATACATCAAGCATGGAATAGAAGCTGATGACATCGAGGCACTGTACAAGAAGGTGCATGCTGCCATCCGTGCTGATCCTACTCTCAAGAAATCCGCGAAACAGCCACCAAAGGAGCACAAGAGGTAG 702 0.4402 MVYVKAQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLAAAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDDEYEGNVEGALDGGLDIPHSDKRFAGFDKEKKQLDAEVHRKYVFGGHVAAYMKAWEIFYSILAEDEPEKYQTHFSQYIKHGIEADDIEALYKKVHAAIRADPTLKKSAKQPPKEHKR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1518 233 PANTHER RIBOSOMAL PROTEIN L5-RELATED 124 233 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed10g1518 233 CDD Ribosomal_L18_L5e 41 131 - -
Aed10g1518 233 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 124 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed10g1518 233 Gene3D - 124 233 - -
Aed10g1518 233 Gene3D - 1 123 - -
Aed10g1518 233 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 125 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed10g1518 233 PANTHER - 1 125 - -
Aed10g1518 233 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed10g1518 233 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed10g1518 233 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed10g1518 233 SUPERFAMILY Translational machinery components 11 220 - -
Aed10g1518 233 PANTHER - 124 233 - -
Aed10g1518 233 Pfam Ribosomal L18 C-terminal region 203 233 IPR025607 -
Aed10g1518 233 Hamap 50S ribosomal protein L18 [rplR]. 14 214 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1518 Aed-Chr10 19992232 19994257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1518 1 233 Cytoplasmic Ribosomal Protein Gene Family AT3G25520 69.485 2.19e-132 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1518 K02932 - gmx:100817746 408.683