Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1448 ATGAGTGAAAGTGTTGATGGTTTGATAGAGAGGAAGGAAAAGATTGGTGAGCGAATTGTTGCTCTTCAGCAGCTTGTTTCGCCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGATTACATAGGATTCCTTCATAAACAATTTAAGGGTATGGAGCCATGCAGCCCGAGGAGTAGAGGCTTATGTGTTATTCCTGTGTCATTTACAATCGGAGTTGTTGAGAGCAATGGTGCAGATATCTGGGCTCCCATTAAGACTACTACTTCACCTAAATTTGAGAAGGATGATGTCTCCCAATTTCATTGA 318 0.4119 MSESVDGLIERKEKIGERIVALQQLVSPYGKTDTSSVLKEAMDYIGFLHKQFKGMEPCSPRSRGLCVIPVSFTIGVVESNGADIWAPIKTTTSPKFEKDDVSQFH 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1448 105 CDD bHLH_AtbHLH_like 10 56 IPR045239 -
Aed10g1448 105 Gene3D - 9 63 IPR036638 GO:0046983
Aed10g1448 105 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 58 IPR036638 GO:0046983
Aed10g1448 105 PANTHER BASIC HELIX-LOOP-HELIX (BHLH) DNA-BINDING SUPERFAMILY PROTEIN-RELATED 10 80 - -
Aed10g1448 105 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 48 IPR011598 GO:0046983
Aed10g1448 105 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1448 Aed-Chr10 18932383 18934410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1448 10 104 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 45.865 8.38e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1448 - - gmx:100809747 166.392