Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1436 ATGGGGCAGCCAATCTGGCTTGAAGGCAGGGAAGCTATTTGCCCTGACTGTGATGGAGGCTTTGTGCAAGAACTCAACGAGCTGCGAGGAGTTGCACGCCAGCACGGCTTCTCGTCGTCGCGGATGGAAGACGTTCATCAAATGCCTGACATCATGGATGCTGTGAGAGCTGTTATGGACCAAAGAGGTTCTGAGACAAGAACTGGAATCAGAGATGCTGTTGATAGCTTCATGAGGCAGAGAATGGCTGGTAGATACACTAACTTTGATGTTAGAAGAAGGTCTAGTACTGGTTCCGGTTCCGGTTCCGGTTCCGGTTCTGGTGCTATCCTTATTCCTGATCAAACTTGGAGTCTATTTAGTTCTGGTCCTTATTTGATATTCCATGGTCAAGCACCAGGGTTCACTATGCCTAATGGTGCATCAAGAGGGGGTGGTCCTAGGCATGTTGATTTTGGTGACTACTTTTTAGGTCCTAGGCTTGAAGGACTCATTGAGCAACACATTTCGAGCGACCGGCTTGGCCCACCGCCTGCATCGCGCTCTTCGATCGAAGCAATGCCGACTATCAAGATCACACATGAACACCTCCGGTCTGATTCACACTGTCCAGTTTGTAAGGAACGGTTCGAGCTCGGCTCTGAGGCCAGGAAGATGTCATGTGGACACATTTACCACTCAGATTGTATCGTTCCCTGGTTGGTTCTGCATAACTCGTGTCCGGTGTGCCGCGTTGAGCTTCCACCTCAGGGGTGTGGTAGCTCTCGCGGCCGACGGATTTGGGGAGTTAACATATAA 798 0.505 MGQPIWLEGREAICPDCDGGFVQELNELRGVARQHGFSSSRMEDVHQMPDIMDAVRAVMDQRGSETRTGIRDAVDSFMRQRMAGRYTNFDVRRRSSTGSGSGSGSGSGAILIPDQTWSLFSSGPYLIFHGQAPGFTMPNGASRGGGPRHVDFGDYFLGPRLEGLIEQHISSDRLGPPPASRSSIEAMPTIKITHEHLRSDSHCPVCKERFELGSEARKMSCGHIYHSDCIVPWLVLHNSCPVCRVELPPQGCGSSRGRRIWGVNI 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1436 265 MobiDBLite consensus disorder prediction 90 107 - -
Aed10g1436 265 CDD RING-H2_RNF126_like 203 244 - -
Aed10g1436 265 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Aed10g1436 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 250 IPR013083 -
Aed10g1436 265 SMART ring_2 203 243 IPR001841 -
Aed10g1436 265 SUPERFAMILY RING/U-box 183 250 - -
Aed10g1436 265 Pfam Ring finger domain 202 244 IPR001841 -
Aed10g1436 265 MobiDBLite consensus disorder prediction 88 107 - -
Aed10g1436 265 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 258 - -
Aed10g1436 265 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 3 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1436 Aed-Chr10 18786491 18789108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1436 171 247 C3H Transcription Factor Family AT1G68180 53.247 2.90e-25 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1436 K11982 - gmx:100819514 453.366