LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed10g1434	ATGGCCGTTACCTTCTCAAATCTCCACACAGACTCAGGCCTCGAGTCCCTCCAGGGCTTCCTCTCTGGAAAAACCTACGTTTCAGGGGATCAGTTCACAAAGGACGACATCAAAGTGTACGCTGCACTTTTGGAGAAGCCGGGTGGCTCTTTTCCCAATGCTTCCAAGTGGTACGAGGTTGTCTCATCTCACCTTGCTGCAAGCTTCCCTGGCAATGCTCAAGGTGTGAGATTCAGTGGCCAAGCTTCTGCTCCTGCAAAACCGGATGCTTCTGCTGCTGAAGATGATGATGACCTTGATCTCTTTGGTGATGAGACAGAGGAAGACAAAAAGGCAGCAGAAGAAAGGGAGGCTGCTAAGAAGCCAACCAAGAAGAAAGAGAGTGGCAAATCTTCTGTTCTGCTTGACGTCAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGTCTGTTCGCAGTGTTGAGATGCCCGGTCTATTCTGGGGAGCATCCAAACTGGTTCCTGTTGGTTATGGGATCAAGAAGTTGCAGATCATGTTAACCATTGTCGATGACCTTGTATCTGTGGACAGCCTTATTGAGGAGCAACTTACAGTTGAACCCATCAACGAGTATGTTCAAAGCTGTGACATTGTTGCATTCAACAAAATCTAA	660	0.4788	MAVTFSNLHTDSGLESLQGFLSGKTYVSGDQFTKDDIKVYAALLEKPGGSFPNASKWYEVVSSHLAASFPGNAQGVRFSGQASAPAKPDASAAEDDDDLDLFGDETEEDKKAAEEREAAKKPTKKKESGKSSVLLDVKPWDDETDMKKLEESVRSVEMPGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEQLTVEPINEYVQSCDIVAFNKI	219

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed10g1434	219	CDD	EF1B	128	219	IPR014038	GO:0003746\|GO:0006414
	Aed10g1434	219	PANTHER	TRANSLATION ELONGATION FACTOR EF1B/RIBOSOMAL PROTEIN S6-RELATED	1	219	-	-
	Aed10g1434	219	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	1	219	-	-
	Aed10g1434	219	MobiDBLite	consensus disorder prediction	78	132	-	-
	Aed10g1434	219	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	95	103	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Aed10g1434	219	Gene3D	-	123	219	IPR014717	-
	Aed10g1434	219	MobiDBLite	consensus disorder prediction	105	132	-	-
	Aed10g1434	219	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	208	219	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Aed10g1434	219	Pfam	EF-1 guanine nucleotide exchange domain	132	219	IPR014038	GO:0003746\|GO:0006414
	Aed10g1434	219	SUPERFAMILY	eEF-1beta-like	127	219	IPR036219	-
	Aed10g1434	219	SMART	EF1_GNE_2	130	219	IPR014038	GO:0003746\|GO:0006414
	Aed10g1434	219	SUPERFAMILY	GST C-terminal domain-like	11	64	IPR036282	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed10g1434	Aed-Chr10	18772612	18776132	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed10g1434	1	219	Eukaryotic Initiation Factors Gene Family	AT5G12110	71.053	1.10e-102	295

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed10g1434	K03232		-	gmx:100306132	322.783