Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1431 ATGCGGGTTGATCATAGATTCTGGGGTTGGAAATCTTTTTATTCAGGCTTATTGACAGCTATGAGTAGCGTGACAAGTGGGAGTGAGACTCGGAAAATATCAAAAGGTCGTCGATCTTCTTCATTAGATGATGAAGAAGCTGGAGATGGAGGTAACGCAGGAGGAGAAGGTCCTCTGAAGAAAGGCCCATGGACTGCAGCAGAGGATGCGATTTTGGTGGAATATGTCAAAAAGCACGGACAAGGCAATTGGAACGCAGTACAAAAGCATTCAGGACTTGTGCGTTGTGGGAAAAGCTGCCGTCTACGATGGGCAAACCATTTGAGACCAGATCTTAAAAAAGGTGCATTTACTGCAGAGGAAGAGAATCGAATCCTTGAACTCCATGCTAAGATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCTGGGCGTACGGATAATGAGATCAAGAACTACTGGAACACAAGAATCAAAAGAATGCAACGAGCAGGGTTACCAATCTACCCAGACGAATTGTGCCAACGGATACTTAATGGCAATCAAGAAAGTCAAAATGTTGGTACCTTGACAAATGAAGCCTCCCAGCATGATGATCTCTCACAACAAACAGACAATCTTGATATACCAGATATGGAATTCAACAATTTCAAGTTCCATCATGGTCTATTGCATGGACCGTCGATTTTCGAATTGCCTGAAAGCAGCTTGTTGGATCAAAGTTCAAACTCATCCCATAGTTATAACTTATTGATCCCAACTATGCGTCCTTCCAAATGCCCTCGGGAGTCAGAAATGCTATATGATAGTTATGGCAGTTGTACAATTAATGCTGTCCCGCCGCTATTTGATCAGTATGGCAATTATACTAGTGAGAAATTTTCTGACCATCCTAGGTTGTCTCCTCCATGGGATCCTGTTTTTAACACCGGTGGTCAGTTTCACAGTGAAAACCTTATCGGCAGCCATGCCGTATTAAATGGCAATGCCTCTTCTTCTGTGCCCATATTTGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATTCAGAAACTCAACATGGTAGCTGGGGAACGCCTATGTCCCCACTTCCTTCACTTGAGTCTGTTGATACATTGATTCAGTCTCCTCCAGTTGAGCCTATTCTATCGGATCCCATTTCTCCACAGAGCAGTGGTTTGCTGGAATCGGTAGTCTACAACTCGAAGAGCTTGAAAGGCACAAGCAATGATTTATTATTGCAAGAGTTAACAAAAGATCATGACGATAAGCATGAAGCACTCATCCAGTTCCCAGATGACAATTCCAGTAAGAATTTTTTCTTGAAACAGATAGATTATACACAGCCCGATGCTTTACTTGACTTAGGTTGGTTTGGGAATAGCACTGAGTATGAAAGTGATCAATCTGTTCTAAAAGATGCTTTAAGTGCACTTCTTGGTGAAGATTGTCAGGATCAGCAGTAG 1470 0.4313 MRVDHRFWGWKSFYSGLLTAMSSVTSGSETRKISKGRRSSSLDDEEAGDGGNAGGEGPLKKGPWTAAEDAILVEYVKKHGQGNWNAVQKHSGLVRCGKSCRLRWANHLRPDLKKGAFTAEEENRILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPDELCQRILNGNQESQNVGTLTNEASQHDDLSQQTDNLDIPDMEFNNFKFHHGLLHGPSIFELPESSLLDQSSNSSHSYNLLIPTMRPSKCPRESEMLYDSYGSCTINAVPPLFDQYGNYTSEKFSDHPRLSPPWDPVFNTGGQFHSENLIGSHAVLNGNASSSVPIFGAMKLELPSLQYSETQHGSWGTPMSPLPSLESVDTLIQSPPVEPILSDPISPQSSGLLESVVYNSKSLKGTSNDLLLQELTKDHDDKHEALIQFPDDNSSKNFFLKQIDYTQPDALLDLGWFGNSTEYESDQSVLKDALSALLGEDCQDQQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1431 489 Gene3D - 116 198 - -
Aed10g1431 489 Pfam Myb-like DNA-binding domain 64 124 - -
Aed10g1431 489 MobiDBLite consensus disorder prediction 28 62 - -
Aed10g1431 489 CDD SANT 63 108 IPR001005 -
Aed10g1431 489 Gene3D - 60 113 - -
Aed10g1431 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 163 IPR017930 -
Aed10g1431 489 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 21 412 - -
Aed10g1431 489 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 443 486 - -
Aed10g1431 489 ProSiteProfiles Myb-like domain profile. 109 159 IPR001005 -
Aed10g1431 489 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 21 412 - -
Aed10g1431 489 SMART sant 113 161 IPR001005 -
Aed10g1431 489 SMART sant 60 110 IPR001005 -
Aed10g1431 489 CDD SANT 116 157 IPR001005 -
Aed10g1431 489 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 443 486 - -
Aed10g1431 489 MobiDBLite consensus disorder prediction 31 45 - -
Aed10g1431 489 SUPERFAMILY Homeodomain-like 59 155 IPR009057 -
Aed10g1431 489 ProSiteProfiles Myb-like domain profile. 56 108 IPR001005 -
Aed10g1431 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 108 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1431 Aed-Chr10 18705679 18712655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1431 59 484 MYB Transcription Factor Family AT5G06100 40.821 3.12e-91 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed10g1431 Myb_DNA-bind_6 3.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1431 K09422 - gmx:100800658 681.404