Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1421 ATGGGAAACGCTTGTGCTAAAGGAAAACCAGTTGCTCATGTTTCTTCCTCTAATCTTGCTGGAAGCAAAAAGCCTGCAAGTAAGCCAAACCAGTATTCAAATTCTTCTGAACAAGGACCTGCTCCAAGAACTTCAGAATCAAATCTCATCAAATCCATCTCCAGTAGCCTCAAGTCCTTCAGCTTGAATGATCTAAAGGAGGCCACTAAGAACTTCCGGCGGGAAAATTTAATCGGAGAAGGAGGATTCGGGCGTGTCTTCAAAGGATGGATTGATGAGAACACATATGGTCCTACAAAACCAGGAACTGGAATGGTAGTGGCCATAAAAAATCTTAAGCCAGAAAGCTTCCAAGGCCACAAGGAATGGCTTCAAGAAGTGATGTATCTTGGGCAGCTTCAGCATGAAAATTTGGTGAAACTCATTGGTTATTGCTCTGAAGGTAAAAACAGGCTTCTGGTTTATGAGTTCATGCAAAAAGGAAGTTTGGAGAATCATTTATTCAGAAAAGGTGTTCAACCTATGGCCTGGGTTACAAGGGTCAACATTGCAATTGGTGTTGCAAAAGGATTAGCATTCCTACATTCCCTTGATCAAAATGTCATCTTTCGCGATTTAAAGGCTTCTAACATCCTACTTGATTCAGTATGTGACATTAGACATTGA 666 0.4114 MGNACAKGKPVAHVSSSNLAGSKKPASKPNQYSNSSEQGPAPRTSESNLIKSISSSLKSFSLNDLKEATKNFRRENLIGEGGFGRVFKGWIDENTYGPTKPGTGMVVAIKNLKPESFQGHKEWLQEVMYLGQLQHENLVKLIGYCSEGKNRLLVYEFMQKGSLENHLFRKGVQPMAWVTRVNIAIGVAKGLAFLHSLDQNVIFRDLKASNILLDSVCDIRH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1421 221 ProSiteProfiles Protein kinase domain profile. 72 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1421 221 Pfam Protein tyrosine and serine/threonine kinase 75 215 IPR001245 GO:0004672|GO:0006468
Aed10g1421 221 Gene3D Phosphorylase Kinase; domain 1 45 157 - -
Aed10g1421 221 PANTHER OS01G0588500 PROTEIN-RELATED 17 217 - -
Aed10g1421 221 MobiDBLite consensus disorder prediction 15 48 - -
Aed10g1421 221 SUPERFAMILY Protein kinase-like (PK-like) 46 215 IPR011009 -
Aed10g1421 221 MobiDBLite consensus disorder prediction 1 48 - -
Aed10g1421 221 PANTHER TYROSINE KINASE FAMILY PROTEIN 17 217 - -
Aed10g1421 221 SMART serkin_6 72 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1421 221 ProSitePatterns Protein kinases ATP-binding region signature. 78 110 IPR017441 GO:0005524
Aed10g1421 221 Gene3D Transferase(Phosphotransferase) domain 1 158 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1421 Aed-Chr10 18509027 18511538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1421 58 214 Glycoside Hydrolase AT3G07070 51.875 2.41e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aed10g1421 PK_Tyr_Ser-Thr 1.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1421 - - gmx:100800654 386.341