Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1389 ATGGGTGGTTTGATGACGACGGCATTGGATAGAGGGTGGTTGATAGAGCAAAGGGGCAGTGGACAAGAATTAGCATGGATCAGCACAGTGGTAGAGCATAGGCACAAATCGGCACGACTGTCGAGTGAAGGTCTAATCAAGAAGATTGATGAAATCAGCATTCTTTGTGAGATTGAAGTAGGTGCTATAATTTATACTCCTGGTAATCCTCAACCTGAGGTTTGGCCATCTAATTTGGGAGTCCAAAGTGTGCTTTCTAGGTTCAATAGTGTGTCTGAACGGGAACAAAGTAGAAAAAAGTTGTGCCAAGAGAGCTTTTTGAGGCAAATGATCATTAAAGCCCAATTACAATTGAAGAAACTAAGGAATGAAATTAAGAAGAAAGAGGTCACCCTTCTCATGTTTCAGCTTCTTAATGCTAGGAATAATTTTGATAATGTCAGCATGATTGATTTGAATGATGTGTCAAACTTGATTGATCAAAACTTGGAGGAAATTGAAAGGAAAATCAATTTGAACCAAGCCCAAAAGGTGAAACCAATTGTTGACAATGGAGGAGAAACCATGTGTCAAGGAAATGGAGCACTTGTGAATCAATTTCAAGGACTAGAGACCAATTTGGATGACACGCAAAAAAGAATTTATCTTTAG 651 0.3902 MGGLMTTALDRGWLIEQRGSGQELAWISTVVEHRHKSARLSSEGLIKKIDEISILCEIEVGAIIYTPGNPQPEVWPSNLGVQSVLSRFNSVSEREQSRKKLCQESFLRQMIIKAQLQLKKLRNEIKKKEVTLLMFQLLNARNNFDNVSMIDLNDVSNLIDQNLEEIERKINLNQAQKVKPIVDNGGETMCQGNGALVNQFQGLETNLDDTQKRIYL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1389 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 43 69 IPR002100 GO:0003677|GO:0046983
Aed10g1389 216 SUPERFAMILY SRF-like 43 97 IPR036879 GO:0003677|GO:0046983
Aed10g1389 216 Gene3D - 40 114 IPR036879 GO:0003677|GO:0046983
Aed10g1389 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 34 183 - -
Aed10g1389 216 Coils Coil 104 131 - -
Aed10g1389 216 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 34 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1389 Aed-Chr10 17743134 17745661 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1389 49 172 Type I MADS-box Gene Family AT5G48670 41.129 1.19e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed10g1389 SRF-TF 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1389 - - gmx:102664096 243.817