Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1372 ATGGATTCATTTGAGCCAGATGGAAATGGGAAGGAGGAGTCCCTGCCACCACCTCCCCCTATTGTTCCCTCTGATGTTGTACCTCTCAAAGCAGAGGAGGTGCTCTTTACCCCTGCTGAACCTGTTAAGAAAAAGGCTTCCTCCCAACTTCCAATGGCCAGAGCTGGTCTGGGTTCAAAAGGAAATAGAATACAACTACTAACCAATCACTTCAAAGTTAATGTTGCTAAAAATGATGGGCATTTCTTCCACTATAGTGTGGCTTTTACTTACGAAGATGGACGCCCTGTAGAAGGTAAGGGTGTTGGGAGAAAGATAATGGACAGGGTGCAGGAGACGTATCATTCTGACTTAAATGGTAAGCACTTTGCATATGATGGGGAGAAAAGTCTGTTTACTAATGGCTCCCTTCCCCAAAACAAGCTTGAGTTTGAAGTTGTTCTTGAGGATGTCACCTCTAACAGGAACAATGGCAATTGCAGCCCTGATGGTAATGGGGAAAATGAGAGTGACAAAAAGAGGATGCGACGTCCTTACCGTTCGAAGACATTCAAAGTAGAGATAAGCTTTGCTGCAAAAATTCCAATGCAGGCCATCGCCAGTGCCTTACGTGGGCAAGAGACAGAGAATTTTCAAGAAGCTATTAGAGTTCTTGATATCATTTTGAGACAGCATGCTGCTAAGCAAGGCTGCTTACTTGTACGCCAATCTTTTTTCCACAATGATCCAAATAATTTTGCTGAAGTAGGAGGTGGTGTCCTAGGCTGTAGAGGATTCCATTCAAGTTTTAGAACTACACAGAGTGGCCTGTCTCTTAACATAGATGTCTCAACTACCATGATAATTTCTCCTGGGCCAGTGGTGGATTTCTTAATTTCCAATCAAAATGTGAGAGATCCTTTTCAACTTGACTGGGCTAAGGCCAAAAGGACCCTAAAAAATCTGAGGATTAAAACTAGCCCATCTAATCAAGAATTCAAAATTACTGGGCTCAGTGAACTCCCTTGCAGAGAGCAGACTTTTACTTTGAAAGGTAAAGGTGGAGGGGACGGTGAAGAAGGTAATGAGGAAATCACTGTATATGATTATTTTGCTAATGTTCGTAAGATAGATCTCCGATACTCTTCTGACCTTCCATGTATCAATGTTGGCAAGCCTAAACGACCAACATTTTTCCCCATTGAGCTTTGTGAATTGGTATCATTGCAACGATATACAAAAGCTCTGTCCTCACTTCAAAGGGCTTCATTAGTGGAGAAGTCCAGGCAGAAGCCACAAGAGAGGATGAAAATTTTGACTGAAGCACTGAGAACCAGCAACTATGGTGCTGAACCTATGCTCCAAAATTGTGGAATTTCTATAAGCACTGGCTTCACTGAAGTGGAGGGTCGGGTCTTGCCTGCACCAAGGTTGAAGTTTGGCAATGGTGAGGATCTCAATCCTAGGAATGGGAGATGGAATGTCAGCAGAGTGAAATTTGTGGAACCGTCAAAAATAGAAAGATGGGCTGTTGCTAACTTTTCTGCACGCTGTGATGTACGAGGACTTATACGGGACCTCATTAGAATTGGAGATATGAAGGGAATTACTATAGAACAACCATTTGACGTGTTTGATGAGAGTCCACAGTTTAGGCGTGCCCCACCTATGGTTAGAGTGGAGAAAATGTTTGAAAACATCCAATCTAAACTTCCCGGGGCTCCTCAGTTCCTTCTCTGTTTGCTTCCTGATCGGAAAAATTGTGAAATTTATGGTCCATGGAAAAAGAAGAATCTAGCTGATTTTGGAATCATTAATCAATGTATGTGTCCTCTAAGGGTCAATGACCAGTTCCTAACCAATGTTATGTTGAAGATCAATGCCAAGCTTGGTGGATTGAATTCAATGTTAGGCGTTGAACATTCTCCTTCTCTTCCTGTTGTTTCCAAAGCTCCCACCCTTATTCTGGGCATGGATGTGTCACATGGCTCACCTGGGCAGACTGACATTCCTTCAATTGCTGCGGTAAATGATAATTGGTCTTTTGTTTTCTATGAAGTGTTTCAAAATGCATATGTTGACACTAAGCCTAATCTTCTAGAGAAAGGGCATGTGTTCGTACCCAATCTGCAAAGGGAAAGTTTGCTTGATTTCTATACAACTTCTGGGAGGCGAAAACCGGAAAATATAATCATATTCAGAAGAATCACCACACCAGATTTTTCCAGCCTGGCTCTCCTGACAATGTCCCACCTGGCAAGAACTGTTATTGACAATAAAATTTGTCATCCCAGAAATTATGATTTCTACCTATGTGCACATGCTGGAATGATAGGAACTAGTAGGCCTACCCATTATCATGTGCTGCTTGATCAAGTTGGTTTCTCTCCGGATCAGCTGCAGGAGCTTGTCCATTCCTTATCATATGTTTATGATCAATCTAAACAATATAAATTGATTGTGAATATGACAGTTGCACCAATATGCTATGCACACTTGGCTGCTTCCCAGTTGGGGCACTTCATGAAATTTGAGGACAAGTCTGAAACATCTTCTAGCCATGGTGGATTGAGCGGTGCCGGTGCCAGCACTGTTCCCATCCCCCAGTTGCCCCCGTTGCAGGAGAATGTCCGCAACACAATGTTCTTTTGTTGA 2634 0.4271 MDSFEPDGNGKEESLPPPPPIVPSDVVPLKAEEVLFTPAEPVKKKASSQLPMARAGLGSKGNRIQLLTNHFKVNVAKNDGHFFHYSVAFTYEDGRPVEGKGVGRKIMDRVQETYHSDLNGKHFAYDGEKSLFTNGSLPQNKLEFEVVLEDVTSNRNNGNCSPDGNGENESDKKRMRRPYRSKTFKVEISFAAKIPMQAIASALRGQETENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPNNFAEVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIISPGPVVDFLISNQNVRDPFQLDWAKAKRTLKNLRIKTSPSNQEFKITGLSELPCREQTFTLKGKGGGDGEEGNEEITVYDYFANVRKIDLRYSSDLPCINVGKPKRPTFFPIELCELVSLQRYTKALSSLQRASLVEKSRQKPQERMKILTEALRTSNYGAEPMLQNCGISISTGFTEVEGRVLPAPRLKFGNGEDLNPRNGRWNVSRVKFVEPSKIERWAVANFSARCDVRGLIRDLIRIGDMKGITIEQPFDVFDESPQFRRAPPMVRVEKMFENIQSKLPGAPQFLLCLLPDRKNCEIYGPWKKKNLADFGIINQCMCPLRVNDQFLTNVMLKINAKLGGLNSMLGVEHSPSLPVVSKAPTLILGMDVSHGSPGQTDIPSIAAVNDNWSFVFYEVFQNAYVDTKPNLLEKGHVFVPNLQRESLLDFYTTSGRRKPENIIIFRRITTPDFSSLALLTMSHLARTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDQVGFSPDQLQELVHSLSYVYDQSKQYKLIVNMTVAPICYAHLAASQLGHFMKFEDKSETSSSHGGLSGAGASTVPIPQLPPLQENVRNTMFFC 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1372 877 CDD PAZ_argonaute_like 284 400 - -
Aed10g1372 877 Gene3D - 465 631 - -
Aed10g1372 877 SMART Piwi_a_2 570 836 IPR003165 GO:0003676
Aed10g1372 877 Pfam Argonaute linker 1 domain 234 282 IPR014811 -
Aed10g1372 877 Gene3D paz domain 278 405 - -
Aed10g1372 877 SUPERFAMILY PAZ domain 279 441 IPR036085 GO:0005515
Aed10g1372 877 Pfam N-terminal domain of argonaute 63 222 IPR032474 -
Aed10g1372 877 Pfam Argonaute linker 2 domain 427 473 IPR032472 -
Aed10g1372 877 ProSiteProfiles Piwi domain profile. 570 836 IPR003165 GO:0003676
Aed10g1372 877 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 728 - -
Aed10g1372 877 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 728 - -
Aed10g1372 877 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 748 876 - -
Aed10g1372 877 ProSiteProfiles PAZ domain profile. 309 401 IPR003100 GO:0005515
Aed10g1372 877 MobiDBLite consensus disorder prediction 1 24 - -
Aed10g1372 877 MobiDBLite consensus disorder prediction 153 178 - -
Aed10g1372 877 MobiDBLite consensus disorder prediction 843 862 - -
Aed10g1372 877 Gene3D - 637 737 IPR036397 GO:0003676
Aed10g1372 877 Gene3D - 741 877 IPR036397 GO:0003676
Aed10g1372 877 SMART DUF1785_2 232 284 IPR014811 -
Aed10g1372 877 Pfam PAZ domain 288 417 IPR003100 GO:0005515
Aed10g1372 877 Pfam Mid domain of argonaute 480 533 IPR032473 -
Aed10g1372 877 Pfam Piwi domain 571 727 IPR003165 GO:0003676
Aed10g1372 877 Pfam Piwi domain 748 836 IPR003165 GO:0003676
Aed10g1372 877 SUPERFAMILY Ribonuclease H-like 554 834 IPR012337 -
Aed10g1372 877 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 748 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1372 Aed-Chr10 17403711 17412319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1372 17 877 Eukaryotic Initiation Factors Gene Family AT1G48410 30.394 1.82e-118 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1372 K11593 - gmx:100820376 1489.94