Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1275 ATGGCAACGTCAAATCTAGGAGAAGTATCCCGTCTCCATAGTTTTGGTTCGGTAGTTGACCGTGCCATCAGGAGTAGAACTCCCTCAATTTTGGGGGCATCCGATGATGTTCATAGTTTAGCTGCTTCAGTGATGATGAGGACTGTTGCTGCACGATTATCGCAAGTGGAACTGGAGGTGCCCGGAACTGCAACAAGACATGTTGCTGCACGATTATTCACCCTCGCTGAGCTTAAAGCAGCCACCAACAAATTCTCACTTTGCAACAAGATTTATGATGATGGTGGCCTTGGTGTGTACAAAGGAAGAGTAGCTGATGGTCGTGAGGTCGCAATCCAGAGGAAACAAGCCATGAGATGCTCGTCTGGTAAGTTTGAATTTTCCTCCTTGTCCCGTTTACACCACAGGAACTTGGTTGGACTGGTTGGGTACTGTGAAACCAGAGATGAAAGGTTGTGGGTGTATGATTATATGACGAATGGGTCGTTGCATGACCAATTGCATGGGGAGAATGGTAGTAGTAGTACTGTGTTGAATTCGTGGAAAACGAGGATGAAGATTGCTTTGGATGCTTCCCGCGGAATAGAATATCTTCATAACTATTCAGATATATTTTTTGTTCACAAAAATATCAATTCTGAAAATATTCTTCTTGATGCCACTTGGACGGCAAGAGTATCTAATTCTGAAAGATTGTTCATGAATTCAGAACCTTATGGTGAATACGAAGATGAGAAGATAATAAGAATCATGGGATACCTTGCTCCTAAGTACATTAAATTCGGTAAGTTCACAGCAAAGATTGATGTGTATGGGTTTGGAGTTGTACTGCTTGAACTTTTAACTGGAAAGGAAGTTACAATCAATGCAAGAAATGGTATTCCATCAAGCAGTGTGGTGGACTTTGCACTACCTGCTATTTTGGCCAGAGATTTGGTCGCAATTTTGGATCCAAGGGTTGGACCACCCGATGTAAATGAAGCACGGGCACTGGAATTCTTGGCATATACCGCTATCTGCTGTGTGAAATGCGAAAGTAATGATAGACCAACCATGGTTGACATTGTGCTCAATTTGGAGCAGGCTTTGGCTACTTGTTATAGAAGCCCATATGACGATGATGAGAATTTTTCCTCTCCACTGCTTGAATTTTCCACAAGCCCTTTTAGTATTTCTCTCACCTTTAGGAATATTTCAATACTTACTGAGGAGGATTCGGACTCAGATGAATGTGATAGCTTTTCCATCGCTACTGTGTCCGATTCAGAATATGATGATATATTAAGATGA 1290 0.4202 MATSNLGEVSRLHSFGSVVDRAIRSRTPSILGASDDVHSLAASVMMRTVAARLSQVELEVPGTATRHVAARLFTLAELKAATNKFSLCNKIYDDGGLGVYKGRVADGREVAIQRKQAMRCSSGKFEFSSLSRLHHRNLVGLVGYCETRDERLWVYDYMTNGSLHDQLHGENGSSSTVLNSWKTRMKIALDASRGIEYLHNYSDIFFVHKNINSENILLDATWTARVSNSERLFMNSEPYGEYEDEKIIRIMGYLAPKYIKFGKFTAKIDVYGFGVVLLELLTGKEVTINARNGIPSSSVVDFALPAILARDLVAILDPRVGPPDVNEARALEFLAYTAICCVKCESNDRPTMVDIVLNLEQALATCYRSPYDDDENFSSPLLEFSTSPFSISLTFRNISILTEEDSDSDECDSFSIATVSDSEYDDILR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1275 429 Gene3D Transferase(Phosphotransferase) domain 1 158 378 - -
Aed10g1275 429 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 43 369 IPR044815 GO:0004674
Aed10g1275 429 Pfam Protein tyrosine and serine/threonine kinase 125 286 IPR001245 GO:0004672|GO:0006468
Aed10g1275 429 SUPERFAMILY Protein kinase-like (PK-like) 66 359 IPR011009 -
Aed10g1275 429 Gene3D Phosphorylase Kinase; domain 1 45 157 - -
Aed10g1275 429 ProSiteProfiles Protein kinase domain profile. 85 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1275 429 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 43 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1275 Aed-Chr10 13298697 13299986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1275 50 366 Receptor kinase-like Gene Family AT3G55950 46.356 1.83e-76 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Aed10g1275 PK_Tyr_Ser-Thr 3.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1275 - - gsj:114396534 382.489