Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1249 ATGGACCGATCGAGTCAGCAAAGACCTGTGTATTTTCACTCCGAAAGCATCCATTTCAGAGGCACCGACATCTCTCAGCCTAACATGTGCACAGTGCTTACAGCTTTAGGGAATGGAACTAATCTAGATTCTCATTATGTACTAGATGTTGACGACAACTTTACAATGTTTGGGATGACACAATATAATGGAGTTCAGCAAGCTCCCAGTGCTAATGGAAGTTCATCAGAAAATGCAAGAATGTATCCACTGAGATATCACAGATTTCCCCATCCTCCTCCACAACAGTACCATAGATTTCATAATCAAACACATTATGTGCAAGAGATCAGAAGTGACTCCATCATCTTTCATCCTCCAGTAGCTGCTCCTTCGTATAGAGTTCTGACGAATCCTTTACACAGTTCTTCAATCCTCATACAAGATGCTATTGACATGGGTGCTAGGCATGTTGGCCCTGCACCATATGGTATACACCGGAGAACTCTTGGACCTCAAAACCTTCCTCGTGCAACATTTCTCCGATATGATGATGTTGCTTTAGTGCTGGTTGATCATCATACTAATATGCGTTTGGACACTGAAGATATGTCTTATGAGGCAAGTATATTACGCATAGAGCTTCTTGCATTAGGTGAGTGGATTGGCGATGTAAAATCGGGTTTGTCAGAGAACATAATTACAAGTCAAATGAAGACAAAAACTTGTTTACTACCTACCGGTGCTACTAACTTGGAGGAGGCAGCTTGTGATGAACATGAACCTGATTGTTGCATAATATGTCAGGATGAATATGAGAACCAAGACAAGATTGGAATTCTCCAATGCGGACATGAATATCATGCTAATTGTCTAAGGAAATGGTTACTTGAAAAAAATGTCTGTCCCATATGCAAATCAAAAGCATTGACAACTAGTTAG 921 0.4061 MDRSSQQRPVYFHSESIHFRGTDISQPNMCTVLTALGNGTNLDSHYVLDVDDNFTMFGMTQYNGVQQAPSANGSSSENARMYPLRYHRFPHPPPQQYHRFHNQTHYVQEIRSDSIIFHPPVAAPSYRVLTNPLHSSSILIQDAIDMGARHVGPAPYGIHRRTLGPQNLPRATFLRYDDVALVLVDHHTNMRLDTEDMSYEASILRIELLALGEWIGDVKSGLSENIITSQMKTKTCLLPTGATNLEEAACDEHEPDCCIICQDEYENQDKIGILQCGHEYHANCLRKWLLEKNVCPICKSKALTTS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1249 306 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 65 305 - -
Aed10g1249 306 ProSiteProfiles Zinc finger RING-type profile. 258 299 IPR001841 -
Aed10g1249 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 65 305 IPR045191 GO:0061630
Aed10g1249 306 Pfam Ring finger domain 257 299 IPR001841 -
Aed10g1249 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 304 IPR013083 -
Aed10g1249 306 SMART ring_2 258 298 IPR001841 -
Aed10g1249 306 SUPERFAMILY RING/U-box 251 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1249 Aed-Chr10 12689053 12690645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1249 185 305 C3H Transcription Factor Family AT2G15530 45.902 7.48e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1249 K19041 - gmx:100820042 315.849