Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1230 ATGGATGAAAGGAGAGTGAATATAATCGCTGCTATATCAGTGATCACACTGACTATTCTCATAGTTGTTGCTCGCGTGACTTTGAAGCTCTCGAAGTCATTCTTCCTCATTTGCGGCGCAGGCGTTGCTGTGATTGTGGCTCTCCTTGCTTATGTGTTCGTGAGCATAAGTTACAACCGTAGAAGGAGGCTACTGGAGTCGCAGCACGAATCCGAAAGCCAAGAACTTCGCATAGAGTACAGTTTCCTGAGGAAAGTTGCAGGGGTTCCCATAAAGTTCAGACACAAGGAGCTTGAGGAAGCCACTGATGGGTTCCGAGCACTGATCGGAAAGGGTGCATCTGCTTCGGTTTTCAAGGGAATTCTCAGCGACGGAACTTCCGTCGCTGTGAAACGAATTGATGCAGAGGAAAGAGGGGAGAAGGAGTTCAGATCAGAGGTTGCAGCCATAGCTAGTGTGCATCATGTGAACTTAGTGAGGCTATTGGGATATTGCAATGCTCCAACAGCTCCTAGATACCTTGTTTATGAATATGTCTCGAATGGGTCTTTGGATTGTTGGATTTTTCCCAAAAGGATTGTGAATGAGAAAGTGAGGGAAGGGAAACTCATGGAAATTGTTGATCAAAGGTTGTTGGATTTGGAACATTGTGGTGGTGTTGATGAGAGGCAGGTTAGGACACTGGTTTATGTTGCTTTGTGGTGCGTGCAAGAGAAGCCACGGTTGAGGCCTAGCATGGTACAAGTTGTTGACATGCTTGAAGGGCGTGTGAGGGTGGAGACTCCACCTGATACAAGAATGGTTCTGGTTGATTTTCTCTGTGTGGATGATAATGATGATGAAAGTGCTGCAACAACTGATAGTAATAATAGCTTGCCAGTGTTGGATTTTGTGTCGAATCAAAGAACACAAAGCAATGGGGAGGAGTGTTCTTCTACCTACTCAGTTGCTACCACCGTTTTGTCGGGAAGATAG 975 0.4585 MDERRVNIIAAISVITLTILIVVARVTLKLSKSFFLICGAGVAVIVALLAYVFVSISYNRRRRLLESQHESESQELRIEYSFLRKVAGVPIKFRHKELEEATDGFRALIGKGASASVFKGILSDGTSVAVKRIDAEERGEKEFRSEVAAIASVHHVNLVRLLGYCNAPTAPRYLVYEYVSNGSLDCWIFPKRIVNEKVREGKLMEIVDQRLLDLEHCGGVDERQVRTLVYVALWCVQEKPRLRPSMVQVVDMLEGRVRVETPPDTRMVLVDFLCVDDNDDESAATTDSNNSLPVLDFVSNQRTQSNGEECSSTYSVATTVLSGR 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1230 324 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Aed10g1230 324 PANTHER RECEPTOR-LIKE KINASE 1 193 - -
Aed10g1230 324 PANTHER RECEPTOR-LIKE KINASE 192 324 - -
Aed10g1230 324 Gene3D Transferase(Phosphotransferase) domain 1 177 272 - -
Aed10g1230 324 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 193 - -
Aed10g1230 324 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 192 324 - -
Aed10g1230 324 Pfam Protein kinase domain 108 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1230 324 Gene3D Phosphorylase Kinase; domain 1 64 176 - -
Aed10g1230 324 SUPERFAMILY Protein kinase-like (PK-like) 86 199 IPR011009 -
Aed10g1230 324 ProSiteProfiles Protein kinase domain profile. 103 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1230 Aed-Chr10 12286035 12287793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1230 189 265 Receptor kinase-like Gene Family AT5G20050 54.545 2.82e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Aed10g1230 Pkinase 3.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1230 - - gmx:100791152 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1230 10 12286035 12287793 Aed10g1230 10 12286035 12287793 ECH
Aed6g1739 6 21011038 21013423 Aed10g1230 10 12286035 12287793 PCT