Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1214 ATGAAGGACCCAGAAGAGGAGCACCAAGTTGTGAATTCTAGAATGCCTCTTCAGAAATCTGCAGAACGTAGTAGAAGGAGGTGTAGGAGAAGGAATACTCAGTGCAAGATAGAGAAATTGATGCAAGAAACAGAACTTGGTTCTGCTTCTGCCACTTGCAAGAGTCTTGTGTTTCATCAAAGGCCTGGCTTTGGCCAACTTGGAACTAAGTGTCTCATCAAAGCCAACCACTTCCTTGCAGATATTTCAGTTTCTGACTTGACCCATTACAATGTTCAAATAACACCTGAGGTCACTTCTCGTAAAACAAGTAAGGCTATCATAGCAGAGTTGGTGAGGCTCCACAGGAACACTGAATTAGCCTCGAGGCTCCCTGTGTTTGATGGAGGGAGAAACCTTTACACTGCTGGTTTGCTTCCTTTTGCATACAAAGAGTTCGATGTAACGTTGAGCGAGGATGATGATGCAAGCATGCATCAACTACGTGAGCTTCTTAGTGGGAAGCAAGTGAGCAATCCGCAAGAAGCGCTAAGTGTCTTTGACATTGTGTTAAGGGAGCTTTCGGCTCAAAGTTATGTGTCAATTGGGAGGTTTCTCTATTCTCCTGATGTAAGAAAACCGCAGCAGTTGGGTGGTGGCCTTGAATCATGGAGGGGCTTCTATCAGAATATGTCATCAATGGCTTTTATTGAACCACTACCTGTGATTGACTTTGTTGCTCAAATTTTGGGAAAAGATATAAAAAAGGCCTTAAGAGGTGTAAAAGTTGAAGTTACACATAGAGGAAATTTTCGAAGGAAGTATAGAATATCAGGATTGACATCACAACCTACAAGGGAGCTAATTTTCCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTTGATTATTTTCAAGAAATGTATGGATTTACTATCAAATACTCTCATCTACCTTGCCTTCAAGTAGGAAGTCAAAGGAAAGTGAACTATTTGCCCATGGAGGCATGCAAGATAGTTGGAGGCCAGAGATATACAAAAGGCCTAAATGAAAAGCAGATAACTTCTCTGCTGAAGACAGTTCAACAAAACAATTATGAGAATAGTCCCTATGCAAAGGAGTTTGGCATCAGCATAGACAACAAGCTTGCATCAGTTGAGGCTCGGGTTCTTCCAGCTCCATGGTTGAAATATCACGACACTGGAAGAGAAAAAGAATACTTGCCACAAGTTGAAAGTTATAAATGGAAGTACTGTAAGATATTGGGCGTGCATCAACTTCTCACGAAGTGTACAGGAAAGTACAGCTCGTGGATTTTGCCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGGTGATCTCAAAAGAATCTGCGAAACGGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAGTACCTGGCTAATGTGGCACTAAAAATCAATGTCAAGATTCCACTGGTTAGTGATATTCCAACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCAGGAGAGGATTCTTGTCCATCCATTGCTGCTGTTGTAGCCTCTCAGGACTGGCCTGAAGTAACAAAGTATGCCGGGTTGGTTTGTGCACAGCCTCATCGAGAAGAACTCATTCAAGATCTTTTCAGATGCTGGAAAGATCCCCAGAGGGGTGTAGTTTATGGTGGTATGATCAGGGAGCTTTTACTATCATTTAAGAAGGCAACTGGACAAAAACCATTGAGAATAATTTTTTACAGGTACTGTGGTAGATTCAAAGATCTGCCATCCTTCCGAATTCGACTTCTACTTATGCAGTCATGCAGGAATTCAGTGCCTCCAGCATACTATGCTCATCTAGCAGCCTACAGGGCACGATTCTACATGGAACCTGATGTTGCTGAGATTACAAAACTGCGAGGAACAAGATCGAAGGAAGCGCCTGTTCGGCCGTTGCCTGCTCTCAAAGAGAAGGTGAAGAATGTTATGTTTTACTGTTGA 1998 0.4209 MKDPEEEHQVVNSRMPLQKSAERSRRRCRRRNTQCKIEKLMQETELGSASATCKSLVFHQRPGFGQLGTKCLIKANHFLADISVSDLTHYNVQITPEVTSRKTSKAIIAELVRLHRNTELASRLPVFDGGRNLYTAGLLPFAYKEFDVTLSEDDDASMHQLRELLSGKQVSNPQEALSVFDIVLRELSAQSYVSIGRFLYSPDVRKPQQLGGGLESWRGFYQNMSSMAFIEPLPVIDFVAQILGKDIKKALRGVKVEVTHRGNFRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFQEMYGFTIKYSHLPCLQVGSQRKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKTVQQNNYENSPYAKEFGISIDNKLASVEARVLPAPWLKYHDTGREKEYLPQVESYKWKYCKILGVHQLLTKCTGKYSSWILPTVSSDVPNLRHGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFRCWKDPQRGVVYGGMIRELLLSFKKATGQKPLRIIFYRYCGRFKDLPSFRIRLLLMQSCRNSVPPAYYAHLAAYRARFYMEPDVAEITKLRGTRSKEAPVRPLPALKEKVKNVMFYC 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1214 665 ProSiteProfiles Piwi domain profile. 431 586 IPR003165 GO:0003676
Aed10g1214 665 SUPERFAMILY Ribonuclease H-like 430 592 IPR012337 -
Aed10g1214 665 Gene3D - 352 487 - -
Aed10g1214 665 Pfam PAZ domain 244 350 IPR003100 GO:0005515
Aed10g1214 665 Pfam N-terminal domain of argonaute 70 184 IPR032474 -
Aed10g1214 665 Gene3D - 602 665 IPR036397 GO:0003676
Aed10g1214 665 SMART Piwi_a_2 432 629 IPR003165 GO:0003676
Aed10g1214 665 Pfam Argonaute linker 1 domain 194 223 IPR014811 -
Aed10g1214 665 Gene3D paz domain 227 338 - -
Aed10g1214 665 PANTHER PROTEIN ARGONAUTE 10 19 408 - -
Aed10g1214 665 ProSiteProfiles PAZ domain profile. 247 334 IPR003100 GO:0005515
Aed10g1214 665 PANTHER PROTEIN ARGONAUTE 10 439 586 - -
Aed10g1214 665 Pfam Piwi domain 446 587 IPR003165 GO:0003676
Aed10g1214 665 Gene3D - 488 594 IPR036397 GO:0003676
Aed10g1214 665 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 607 664 - -
Aed10g1214 665 SUPERFAMILY PAZ domain 228 357 IPR036085 GO:0005515
Aed10g1214 665 CDD PAZ_argonaute_like 232 333 - -
Aed10g1214 665 PANTHER PROTEIN ARGONAUTE 10 607 664 - -
Aed10g1214 665 SMART PAZ_2_a_3 224 364 IPR003100 GO:0005515
Aed10g1214 665 MobiDBLite consensus disorder prediction 1 29 - -
Aed10g1214 665 Pfam Argonaute linker 2 domain 343 391 IPR032472 -
Aed10g1214 665 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 19 408 - -
Aed10g1214 665 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 439 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1214 Aed-Chr10 11857557 11866657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1214 611 665 Eukaryotic Initiation Factors Gene Family AT5G43810 55.738 9.07e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1214 K11593 - jre:109006295 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1214 10 11857557 11866657 Aed10g1214 10 11857557 11866657 ECH
Aed6g1726 6 20900211 20906788 Aed10g1214 10 11857557 11866657 PCT