Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1213 ATGGCTTCATCTTCCTCCAACGGAAGCTCCAGCGGAAGCAAGACGAGGGACATCGACGGCGACCTCGCCGGTTTCGGCTACAAAGTCCGGTCATCGGAGCTTCAACACGTGGCGGAAAACATGGAACGTTTAGAGAACGTGATGGACATTGTGAACTCCTCATCATCCACCAACAACAACATATCTCAACTCGCGTCCGACACCGTCTTCTACAACCCCTCCGACATAGGTTCCTGGGTCGACACGCTCCTCTCCGAGTTCGACCAAACGCCGCCGCTGCCCTACGATTTCTCCGATCTTCCCGATCTGGACTACGCCAATCAAAACCACAGACTAACAACAACGCTGGTGGCCACCGTGGAAGAAGAGGACTCGGGGATAAGACTTGTCCACACGCTGATGACGTGTGCGGCTTCTGTGCAACGTGGCGACCTTCCATTCGCCGGCTCCCTCATCAACAACATGCAGGGGCTGCTGGCGCACGTGAACACCAGCAGCGGAATAGGCAAAGTCGCTGGATATTTCATCGACGCGCTGCGCCGCCGCGTCTTTGGACAAAACGCGTTCCTAACCTCGTCACCGTACGAGGATGATGTTCTCTACCACCACTACTACGAGGCGTGCCCGTACTTAAAATTCGCGCACTTCACGGCAAACCAGGCTATTCTAGAGGCTTTTAACGGCCACGACTGCGTCCACGTGATTGACTTCAACCTCATGCAGGGGCTCCAGTGGCCCGCGCTGATCCAGGCCCTGGCGCTTCGGCCCGGCGGGCCCCCGATGTTACGGCTCACGGGCATTGGGCCTCCCTCGTCTGACAACCGCGACACGCTCCGCGAAATCGGGCTCAGGCTCGCTGAGCTGGCGCGCTCTGTGAACGTCCGCTTTGCCTTCCGCGGCGTGGCGGCGTGGAGGCTCGAGGACGTGAAGCCGTGGATGCTTCAGGTGAATCCGAACGAAGCCGTGGCGGTGAACTCCATCATGCAGCTGCATCGGTTACTCGCATCGTGCTCCGAACCGTCAGGTTCGGGAATCGAAACTGTCCTTGGTTGGATCCGAAGTTTGAACCCGAAGATTGTTTCCGTCGTTGAACAGGAAGCGAGCCACAACGAGGACCGGTTCATGGAGCGGTTCACGGAAGCACTTCATTACTACTCGACCGTATTCGACTCGCTGGAGGCGTGCCCGGTCGAACCGGACAAGGCGCTGGCGGAGATGTACCTGCAGAGGGAGATATGCAACGTGGTGTGCTGCGAGGGACCGGTGCGAGTCGAGAGGCACGAGCCGCTGGCTAAGTGGAGGGAGCGGCTCGGGAAAGCCGGTTTCAAGCCGCTGCATTTGGGCTCCAACGCCTACAAGCAAGCCAGCATGTTGTTGACTCTTTTCTCGGCTGAGGGCTACTGCGTGGAAGAGAATCAAGGGTGCTTGACTTTGGGCTGGCATAGCCGCCCTCTCATCTCGGCTTCGGCTTGGCAAGCCGCGCCGCCGATGCAAGATCAATAA 1503 0.5855 MASSSSNGSSSGSKTRDIDGDLAGFGYKVRSSELQHVAENMERLENVMDIVNSSSSTNNNISQLASDTVFYNPSDIGSWVDTLLSEFDQTPPLPYDFSDLPDLDYANQNHRLTTTLVATVEEEDSGIRLVHTLMTCAASVQRGDLPFAGSLINNMQGLLAHVNTSSGIGKVAGYFIDALRRRVFGQNAFLTSSPYEDDVLYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPMLRLTGIGPPSSDNRDTLREIGLRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVNPNEAVAVNSIMQLHRLLASCSEPSGSGIETVLGWIRSLNPKIVSVVEQEASHNEDRFMERFTEALHYYSTVFDSLEACPVEPDKALAEMYLQREICNVVCCEGPVRVERHEPLAKWRERLGKAGFKPLHLGSNAYKQASMLLTLFSAEGYCVEENQGCLTLGWHSRPLISASAWQAAPPMQDQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1213 500 Pfam Transcriptional regulator DELLA protein N terminal 19 91 IPR021914 -
Aed10g1213 500 Gene3D - 17 87 IPR038088 -
Aed10g1213 500 SMART DELLA_2 19 102 - -
Aed10g1213 500 PANTHER OS05G0574900 PROTEIN 7 494 - -
Aed10g1213 500 ProSiteProfiles GRAS family profile. 120 492 IPR005202 -
Aed10g1213 500 Pfam GRAS domain family 129 492 IPR005202 -
Aed10g1213 500 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 494 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1213 Aed-Chr10 11843304 11844806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1213 18 492 GRAS Transcription Factor Family AT1G14920 48.170 1.55e-162 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed10g1213 GRAS 1.3e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1213 K14494 - gmx:100805968 878.241