Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1211 ATGCCATCATCACAACAACAAGCAGAACTAAGAATGGTGGATTGCAACAAGCCCTACAGCTACTACTACTCCACACTGCTGAAATCATTTGCAGATACTCAAACTGATCATGATCAGATTCAGACCAACTACAAGCTTGAAGAGTTCCTCTCTCGCTTAGAGGATGAACGCGTCAAGATTGACGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTCCTCACCAATGCTGTGGAGGCTTCAAGGCAGCAACTACAAGCCTTCAGATCAAACCAATTAGGAACAAGGCCAGTTCTTGAAGAATTCATACCCATAATAAAGCATCAAAATTCTCAAGAAATCACTGATCAGAAAGCAATAAGCATCTCCGAAAACAAGGCAAATTGGATGACATCAGCTCAACTATGGAGCCAAGAAGCAAGTGAATTAGGAACAACAAAACCACAATGCACAATCACATCATCACCAAAAGAAGGTGCTGCTGATATTATTAATGGCTTTAGCCCTAAGCTAGCCCTAGACAACAAACACAGGAATGGAGGAGCCTTTTTACCATTCTCAAAAGAGAGAAACTCATGCCAACAAGGATTAATTAGGGGTCTTCCTGAGTTGGCCCTTGCATCTTCTGAGAAAGAAATTGAGGAGAAGAAGAAGTGTGAATTAGAGGCAGAGAAATGTTCCAAAATAGAGAATAATTGTGAAGATCAAGGAAAAAGTACTGCTTCTGAGGCACAAACAGAAAATGCTTCAACTAACACTACTACTACTAGCAGTGGCCAAACTCATAGGAAAACAAGAAGGTGTTGGTCACCGGATTTGCACCGTCGATTTGTTAATGCTCTTCAGATGCTGGGTGGATCTCAAGTGGCCACCCCAAAACAGATTAGGGAGTTGATGAAGGTTGATGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACTAGAAGACCTAGTCCGAGCCTACAAACAGGAGCACCAACACCTCAGCTTGTAGTCCTCGGAGGAATTTGGGTACCACCAGAGTATGCTTCGGCGGCGGCGGCAGCCGCAACACACTCTAGTGGCCCCACCCTCTATGGCCCACATCCTACCTCACATGTGCCACCATCACAGTATTGTGCCGCCAGCCCAATGCCCCAGGAGTTCTATAACTCAGGACAGTTATTTTCATTACCGCCACCACTAAATGACCACACCCTTTACCACCACCATTTTCACATGTACAAGACCCCACCGCAGCCCCGAAGCTCTCCAGAATCCAATGTTCGGAGCGGTGGCGACCGGTCAGAGAGCATTGAGGATGGGAAGTCCGAGAGTGGTAGCTGGAAAGGAGAGAGTGGAGAGAAGAAAGGGTTGGCAGCACTAAGGGATCGAGAAGGGGAAGTGAGCACAGGAAGTGAGATTACTCTTAAATTCTAG 1437 0.46 MPSSQQQAELRMVDCNKPYSYYYSTLLKSFADTQTDHDQIQTNYKLEEFLSRLEDERVKIDAFKRELPLCMQLLTNAVEASRQQLQAFRSNQLGTRPVLEEFIPIIKHQNSQEITDQKAISISENKANWMTSAQLWSQEASELGTTKPQCTITSSPKEGAADIINGFSPKLALDNKHRNGGAFLPFSKERNSCQQGLIRGLPELALASSEKEIEEKKKCELEAEKCSKIENNCEDQGKSTASEAQTENASTNTTTTSSGQTHRKTRRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSLQTGAPTPQLVVLGGIWVPPEYASAAAAAATHSSGPTLYGPHPTSHVPPSQYCAASPMPQEFYNSGQLFSLPPPLNDHTLYHHHFHMYKTPPQPRSSPESNVRSGGDRSESIEDGKSESGSWKGESGEKKGLAALRDREGEVSTGSEITLKF 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1211 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 261 321 IPR017930 -
Aed10g1211 478 MobiDBLite consensus disorder prediction 234 268 - -
Aed10g1211 478 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 13 478 - -
Aed10g1211 478 MobiDBLite consensus disorder prediction 413 478 - -
Aed10g1211 478 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 13 478 IPR044787 GO:0003700|GO:0006355
Aed10g1211 478 Gene3D - 263 321 - -
Aed10g1211 478 Coils Coil 71 91 - -
Aed10g1211 478 SUPERFAMILY Homeodomain-like 261 322 IPR009057 -
Aed10g1211 478 Pfam Myb-like DNA-binding domain 266 317 IPR001005 -
Aed10g1211 478 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 264 319 IPR006447 GO:0003677
Aed10g1211 478 MobiDBLite consensus disorder prediction 234 264 - -
Aed10g1211 478 MobiDBLite consensus disorder prediction 432 470 - -
Aed10g1211 478 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1211 Aed-Chr10 11811416 11814943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1211 13 478 G2-like Transcription Factor Family AT2G03500 50.000 8.72e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed10g1211 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1211 - - gmx:100809196 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1211 10 11811416 11814943 Aed10g1211 10 11811416 11814943 ECH
Aed6g1724 6 20885397 20888897 Aed10g1211 10 11811416 11814943 PCT