Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1194 ATGCAATCTCAACGCCAAAGTTCATCAGATACGTTTCTCTCTCACAATGGCAATGACCCAATTTCCTATTATGACCCAGCATTTTACTACTACGCCAGGCCCTTTTCCATCGACTCTGAAAGCAACCCAACATCGAAACAAGAAAACAACAACAACCATGGTCTTGTTGTTCCTAATTCTCCCACTCCTCCTTTGTCCTTTTTCCACTTTCCTTCCTCACCCTTTGAAGAAACTACTCAAGTTTTCCTAGAACAGCATCACGATTTTCTCCTTCAGTTTCACCATCAAACTCTCCCTCATCAAGACCCTGAGCCTCCTCAACCTGCTGTTGTCACAACAACAATGGATCTCTGTACTAAAAAGAGTGATCATCATCAGATCCAAAGAAAAAGACCTTGCAACAAGAGAGACAGGCACAGCAAGATCAACACGGCAAGAGGGTTGAGGGATCGGAGAATGAGACTCTCCCTCGAAGTTGCAAAGAGGTTCTTCGGCCTTCAAGACATGCTAGCTTTTGACAAAGCAAGCAAGACCGTGGAGTGGCTGCTGAACCAAGCAAGAGGTGAAATCAATCGGCTAGTGAAAGAGAAAAAGAAGCAGAATAAGAGTAGTGATGATACTCATCACAACCACAACAGTTGTAGCAGTGCTGCTAGTTCGGAATGTGAAGAAGGTGTGTCCAGTCTTGATGAGGTTGTGGTGATGAGTGGAGATCAAGAACAAGAACAAGAAGAAGAGAAAGTAGTAGTGGAGAAAGTTGTGAAGAGAAGGGTCAAGCATTGTAGAAAAACAAGTGCATTTGACCCTCTTGCAAAGGAGTGTAGGGAAAGGGCAAGAGAAAGGGCAAGAGAGAGAACAAGAGAAAAGATATTGAGAAAAGCTGCTGAAGAAGAATCATCAAAGCAATGTAGATCAGTAGAGGAAACAACGAATCAGTATCTGATCCAATTGGGTTCATGGAACCCCTTTGAAACAGGAGATCAAGAATCTGGTGGTGCCAAGAGTAGTAGCACTCACACTCATAGTGTTGTGCATCATCCTAATTCTTCTTCCTTGGACATGATCAAAGAACAAAGCTACCACCACGCAAAGGAGCATGATGATGATGATGATGATGATGATGATTCTTTGGTTATTTTGAGCAAATGGAGCCCCTCCTTGATTTTCAATAACTCTGGATTCTCTCAAGATAATTTCAGTCCTTGGGAAAGCCGTGGGAGGCTTAAAACAATCACAACTTTGTTGATTGCCGACAGAAATTCGCAAGATATGTATTTCTTTACTTTCCTTTCAGAATTTTAA 1302 0.424 MQSQRQSSSDTFLSHNGNDPISYYDPAFYYYARPFSIDSESNPTSKQENNNNHGLVVPNSPTPPLSFFHFPSSPFEETTQVFLEQHHDFLLQFHHQTLPHQDPEPPQPAVVTTTMDLCTKKSDHHQIQRKRPCNKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLAFDKASKTVEWLLNQARGEINRLVKEKKKQNKSSDDTHHNHNSCSSAASSECEEGVSSLDEVVVMSGDQEQEQEEEKVVVEKVVKRRVKHCRKTSAFDPLAKECRERARERARERTREKILRKAAEEESSKQCRSVEETTNQYLIQLGSWNPFETGDQESGGAKSSSTHTHSVVHHPNSSSLDMIKEQSYHHAKEHDDDDDDDDDSLVILSKWSPSLIFNNSGFSQDNFSPWESRGRLKTITTLLIADRNSQDMYFFTFLSEF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1194 433 PANTHER TRANSCRIPTION FACTOR TCP18 82 370 - -
Aed10g1194 433 Pfam TCP family transcription factor 135 290 IPR017887 -
Aed10g1194 433 ProSiteProfiles TCP domain profile. 135 193 IPR017887 -
Aed10g1194 433 MobiDBLite consensus disorder prediction 196 220 - -
Aed10g1194 433 MobiDBLite consensus disorder prediction 39 59 - -
Aed10g1194 433 ProSiteProfiles R domain profile. 272 289 IPR017888 -
Aed10g1194 433 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 82 370 IPR005333 GO:0003700
Aed10g1194 433 Coils Coil 183 203 - -
Aed10g1194 433 MobiDBLite consensus disorder prediction 320 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1194 Aed-Chr10 11487905 11489597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1194 65 286 TCP Transcription Factor Family AT3G18550 36.607 7.14e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Aed10g1194 TCP 2.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1194 - - gmx:100798555 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1194 10 11487905 11489597 Aed6g1702 6 20693652 20695121 ECH
Aed3g1085 3 8562606 8564739 Aed10g1194 10 11487905 11489597 ECH
Aed10g1194 10 11487905 11489597 Aed10g1194 10 11487905 11489597 ECH