Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1189 ATGGATGCAAAGTTTGCAAGAAGGACTGAGCGCATTGGTGGAATAACATGTGTCTATTGGAGAGAAGGGAGATGCAACCGAAATCCTTGCAGATTTTTGCACAGAGAGACAGCATCACCACCTACTATTTCATGTGGTAACGCCAATAATGCACATGGACATGGAAAAAAGTCCTATTCTTCCTATGAGACTACCCCGAAATATTATTCAAAGACAAAGACAGCATTGATCAGAAATAACGGAGATAGAGTAGATGCAACAAAGGTTGCTATGGCCTCAAAGAAATCATCACCAAGGATATGTAAATACTGGAGCAACAACAATTGTGTGCATGGTGAACAATGCACGTATTTACATTCATGGTTTCAGGGTGATGGGTTTTCCACCGTAAACAAGCTTCAAGAACACAAGAAGGTTATCACTGGCATTGTGCTTCCTTCTGGATCTGACAAACTTTATACTGGTAGCACTGATGGGACAGTTCGGATATGGGACTGCCATAGTGGTCAATGTGCTAAGGTCATAAATCTTGGTGTTGAAGTTACCTCTTTGATCAATGAGGGGCCATGGATTTTTGTTGGTCTGCAGAATGCTGTCAAGGCTTGGAATATTGAGACCATTTCAGAGTTTACTCTTGATGGACCCAAAGGCAAAGTCAATGCCATGACGGTCGGCAACGATACACTCTTTGCTGGTGCAGAGGATGGTGTCATTTCTGCCTGGAGAGGAAGCTCTGAAGCTAAGTCTCCTTTTGAACTGGTTGCATCACTCACTGGCCACACTAAAGCAGTGGTTTCCCTGGCTGTTGGACACAAGATGTTGTACTCCGGGTCCATGGACCAAAGCATAAAGGTCTGGGACATGGATACATTACAGTGTACAATGACACTAAAAGAGCATAATGATGTAGTCACATCCCTTATTTGTTGGAACCAATTTTTGTTGTCAAGTTCATCTGACTGCACGATTAAGGTCTGGGCTTGCACTGAAGCGGGATCTTTGACAGTGATATATACGCACACGGAAGAAAATGGTGTTGTTTCACTTTTTGGGATGCCTGATGCAGAAGGCAAGCCAATATTGTTTTCCTCTTGCAGAGACAATTCAGTTCGCATGTATGAATTGCCATCATTCTCTGAGAGGGGTCGTTTATTTACTAAGAAAGATGTTGCATCGATGGAGCTAGGCCCTGGTGGCCTCTTCTTCACTGGAGATGAGACTGGTTCGTTGATGGTGTGGAAATGGTTGGAGGTACCCAATATGGCATCCTCTTGA 1275 0.4369 MDAKFARRTERIGGITCVYWREGRCNRNPCRFLHRETASPPTISCGNANNAHGHGKKSYSSYETTPKYYSKTKTALIRNNGDRVDATKVAMASKKSSPRICKYWSNNNCVHGEQCTYLHSWFQGDGFSTVNKLQEHKKVITGIVLPSGSDKLYTGSTDGTVRIWDCHSGQCAKVINLGVEVTSLINEGPWIFVGLQNAVKAWNIETISEFTLDGPKGKVNAMTVGNDTLFAGAEDGVISAWRGSSEAKSPFELVASLTGHTKAVVSLAVGHKMLYSGSMDQSIKVWDMDTLQCTMTLKEHNDVVTSLICWNQFLLSSSSDCTIKVWACTEAGSLTVIYTHTEENGVVSLFGMPDAEGKPILFSSCRDNSVRMYELPSFSERGRLFTKKDVASMELGPGGLFFTGDETGSLMVWKWLEVPNMASS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1189 424 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 8 420 - -
Aed10g1189 424 SMART c3hfinal6 11 36 IPR000571 GO:0046872
Aed10g1189 424 SMART c3hfinal6 95 121 IPR000571 GO:0046872
Aed10g1189 424 SMART WD40_4 377 414 IPR001680 GO:0005515
Aed10g1189 424 SMART WD40_4 126 165 IPR001680 GO:0005515
Aed10g1189 424 SMART WD40_4 205 242 IPR001680 GO:0005515
Aed10g1189 424 SMART WD40_4 333 374 IPR001680 GO:0005515
Aed10g1189 424 SMART WD40_4 290 327 IPR001680 GO:0005515
Aed10g1189 424 SMART WD40_4 250 287 IPR001680 GO:0005515
Aed10g1189 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 296 IPR001680 GO:0005515
Aed10g1189 424 PANTHER - 8 420 IPR044715 -
Aed10g1189 424 SUPERFAMILY WD40 repeat-like 104 414 IPR036322 GO:0005515
Aed10g1189 424 Gene3D - 123 252 IPR015943 GO:0005515
Aed10g1189 424 Gene3D - 253 422 IPR015943 GO:0005515
Aed10g1189 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 290 - -
Aed10g1189 424 Pfam WD domain, G-beta repeat 292 326 IPR001680 GO:0005515
Aed10g1189 424 Pfam WD domain, G-beta repeat 252 287 IPR001680 GO:0005515
Aed10g1189 424 Pfam WD domain, G-beta repeat 130 165 IPR001680 GO:0005515
Aed10g1189 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 174 IPR001680 GO:0005515
Aed10g1189 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 165 - -
Aed10g1189 424 Gene3D - 15 122 - -
Aed10g1189 424 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Aed10g1189 424 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Aed10g1189 424 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
Aed10g1189 424 ProSiteProfiles Zinc finger C3H1-type profile. 16 37 IPR000571 GO:0046872
Aed10g1189 424 ProSitePatterns Trp-Asp (WD) repeats signature. 274 288 IPR019775 -
Aed10g1189 424 ProSiteProfiles Zinc finger C3H1-type profile. 95 122 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1189 Aed-Chr10 11367278 11369672 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1189 149 377 Eukaryotic Initiation Factors Gene Family AT2G46290 27.481 7.85e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed10g1189 WD40 0.00018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1189 - - gmx:100787799 736.102