Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1184 ATGGCCGAAGCAGAACACCACAACGATCCCACCACCTCGCCGGAGCACGAGGATCAACCCAAAAGCAACAAGAAGAAGCTCCGCAAAAGGAAAAGACCTCTCAAAACCGAGCCGAAACAAGAGGAACAACAAGAAAACAACGATAATGCACAAATACAAACCGAAGATGACGAAGAAGAAAAAGAGGAAGACACAAGCGTCGTCGTTTCGTCCGGAATCATGAGCACAGAGTCTTTCTCCTCTCTGGACTTGTCCGAACCCACTTCCAGAGCCATCGGCGACATGAGCTTCCACCGTATGACTCAGATTCAAGCGAGGGCGATTCCGCCGCTTCTGGCCGGAAGCGACGTACTGGGCGCTGCGAGGACGGGCGCCGGGAAAACCCTAGCGTTCCTGGTTCCAGCAGTGGAGCTGCTGCACAGCGTCCAGTTCACGCCGCGGGATGGGACCGGTGTTGTTGTGATATGCCCGACGAGGGAGCTCGCAATTCAGACGCACTCCGTGGCGAAGGAGCTGCTGAGGTATCACTCGCAGACGCTTGGGCTGGTGATTGGGGGCGCCGGGAGGAAGGGAGAGGCCGAGCGCATTGTGAAGGGGGTGAACCTGCTGGTGGCCACGCCAGGAAGGCTTCTGGATCACCTTCAGAATACAAAGGGGTTCATATTTAAAAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAGATGAAGCAGATTATTAACATACTTCCAAAGAAAAGGCAAACGGCTTTGTTTTCAGCTACACAAACAAAGAAGGTTAAGGATCTTGCCCGCTTATCATTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAGCAGGGTTATGTTGTTGTTCCCTGTGCTAAACGTTTTGTTGTTCTCTATTCATTCTTGAGGAGATACCAATCAAAAAAAGTGATGGTGTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGATCTTCTCAAGGGCACTGGGTTGGACTGCTTAAGTATTCATGGAAAACAAAAGCAACATGCCCGGACTACTACATTCTTCAGCTTCTGCAAAGCAGAAGAGGGAATCTTGCTCTGTACTGACGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGAGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCACTATTTGAAGGCAGCAAAGGTTCCTGTGAAAGAATATGCATTTGATCATAAGAAGCTTGCAAATGTACAATCCCAATTGGAGAAGTTGGTGGCTGGCATTTATCATTTGAATGTTATGGCTAAAGATGCATATAGGTCATATATATTAGCATATAATTCACACTCCATGAAAGATATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTACTTCATTCTGTTTTTCAAACCCACCAAAGGTGCATCTCAACATAGATAGCAGTGCTTCAAAGCATAGGAAGAAAGTACGCAAAGTAGATGGAAAGGGAAGATCATGA 1632 0.4638 MAEAEHHNDPTTSPEHEDQPKSNKKKLRKRKRPLKTEPKQEEQQENNDNAQIQTEDDEEEKEEDTSVVVSSGIMSTESFSSLDLSEPTSRAIGDMSFHRMTQIQARAIPPLLAGSDVLGAARTGAGKTLAFLVPAVELLHSVQFTPRDGTGVVVICPTRELAIQTHSVAKELLRYHSQTLGLVIGGAGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIFKNLKCLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVKDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKGTGLDCLSIHGKQKQHARTTTFFSFCKAEEGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLHYLKAAKVPVKEYAFDHKKLANVQSQLEKLVAGIYHLNVMAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVATSFCFSNPPKVHLNIDSSASKHRKKVRKVDGKGRS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1184 543 MobiDBLite consensus disorder prediction 1 72 - -
Aed10g1184 543 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 467 IPR001650 -
Aed10g1184 543 CDD DEADc_DDX18 88 285 IPR044773 GO:0003724|GO:0005524
Aed10g1184 543 SMART ultradead3 96 301 IPR014001 -
Aed10g1184 543 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 77 105 IPR014014 GO:0003724
Aed10g1184 543 Coils Coil 40 60 - -
Aed10g1184 543 CDD SF2_C_DEAD 298 428 - -
Aed10g1184 543 Gene3D - 17 287 IPR027417 -
Aed10g1184 543 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 229 237 IPR000629 -
Aed10g1184 543 Pfam Domain of unknown function (DUF4217) 459 519 IPR025313 -
Aed10g1184 543 Gene3D - 294 537 IPR027417 -
Aed10g1184 543 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 22 524 - -
Aed10g1184 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 439 IPR027417 -
Aed10g1184 543 SMART DUF4217_3 458 521 IPR025313 -
Aed10g1184 543 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 108 283 IPR014001 -
Aed10g1184 543 PANTHER RNA HELICASE 22 524 - -
Aed10g1184 543 MobiDBLite consensus disorder prediction 1 22 - -
Aed10g1184 543 Pfam Helicase conserved C-terminal domain 313 417 IPR001650 -
Aed10g1184 543 Pfam DEAD/DEAH box helicase 101 272 IPR011545 GO:0003676|GO:0005524
Aed10g1184 543 SMART helicmild6 337 418 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1184 Aed-Chr10 11310619 11317090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1184 77 436 Eukaryotic Initiation Factors Gene Family AT3G13920 31.507 5.93e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1184 K13179 - gmx:100798290 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1184 10 11310619 11317090 Aed10g1184 10 11310619 11317090 ECH