Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1178 ATGGAGCCCATGGACATCGTTGGGAAGGCCAAGGAAGACGCTTCTCTTCCTAAAGCGACAATGACGAAGATTATTAAAGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCACAGGATTTATTGATCGAGTGTTGTGTCGAGTTTATAAACCTTGTCTCGTCGGAGTCGAATGAAGTCTGTAACAGAGAGGAAAGAAGGACGATTGCACCGGAGCATGTGTTGAAGGCTTTAGGGGTTCTTGGATTTGGTGAGTACATTGAGGAAGTTTATGCAGCATATGAACAGCACAAGTTGGAGACAATGCAAGACTCTTTAAAAGGTGCCAAGTGGAGCAACAGGGAACAGATGACTGAGGAAGAAGCATTGGCTGAACAGCAAAGGATGTTTGCCGAGGCACGGGCAAGAATGAATGGAGGAGGAGGTGGAGGTGGAGATGGAGGAGGAGCCATCACTTCCAAGCAGCCAGAAGACACTGACCAAAGTTTAGAGAGCTAA 501 0.483 MEPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNREQMTEEEALAEQQRMFAEARARMNGGGGGGGDGGGAITSKQPEDTDQSLES 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1178 166 PANTHER PROTEIN DR1 HOMOLOG 1 162 IPR044255 -
Aed10g1178 166 PANTHER PROTEIN DR1 HOMOLOG 1 162 - -
Aed10g1178 166 Gene3D Histone, subunit A 5 140 IPR009072 GO:0046982
Aed10g1178 166 SUPERFAMILY Histone-fold 12 140 IPR009072 GO:0046982
Aed10g1178 166 MobiDBLite consensus disorder prediction 136 166 - -
Aed10g1178 166 Coils Coil 115 135 - -
Aed10g1178 166 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1178 Aed-Chr10 11243786 11248205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1178 1 162 CCAAT-DR1 Transcription Factor Family AT5G23090 78.659 3.99e-91 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aed10g1178 CBFD_NFYB_HMF 1.8e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1178 K21751 - gmx:547635 286.574