Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1177 ATGAGTGGCAATAGAAGGAGGAGTCGCCACTTCAGAAGAATCCATGCATTCTCATGTGGGAAAGCTTCATTCAAAGGAGAGCATTCACTCATAGGGGGTCCTGGATTCTCAAGGATAGTGTACTGCAACAATGAAGCTGAACGCGGCGGCGGCGGCGAGGCTAGTAGTCTTGTGAGTTATGGTGATAATTATGTGAGTACTACCAAGTACACAGTGGCTACTTTCCTGCCAAAGTCATTGTTTGAGCAATTCAGGAGGGTTGCCAATTTCTACTTCCTTGTCTGTGCAATTCTTTCGTTTTTCCCGGTTTCGCCTTACTCGGCTGTCAGCAATGTTGTTCCTCTTGTGGTTGTGGTTGCTGCTACAATGGGGAAGGAGGCTGTTGAGGATTGGAGGAGGAAGAAACAGGATATAGATATGAATAACAGAAATGTTAAAGTACATCATGGAGAAGGTGTTTTTGACTACTCTAAATGGAAGGATTTGAAAGTTGGAGACATAGTGAAGGTTGAAAAGGATGAATTTTTCCCTGCTGATCTCATCTTACTTTCATCAAGCTATGATGATGCAATTTGCTATGTTGAGACCATGAATCTTGATGGAGAAACAAATCTGAAAGTTAAACAAGCACTGGAAGAAACATCAACCCTGCAAGAAGACTCGAACTATCAAAATTTCAAGGCTATCATCAAATGTGAAGATCCAAATGCAAATTTGTACGCATTTGTAGGAAGTTTGGAGCTTGAAGACCAACTGTATCCTCTTTCACCTCAGCATCTACTGCTTAGGGACTCGAAGCTAAGGAACACCGAGTTTATCTATGGCGTGGTAATCTTTACAGGCCATGATACAAAGGTTATGCAGAATTCAACAGAACCTCCATCAAAGAGAAGCACGGTTGAGAAACGGATGGATAAGATAATCTACTTTCTGTTCTTTGTCTTGTTTCTAATTTCTTCTATTGGTTCGATTTTCTTTGGGATTGCAACGAGGGAGGATCTTGAAAATGGAGTCATGAAGCGATGGTACCTCAGACCAGATGATACCACTATTTACTTTGATCCAAAGAAGGCACCAGTTGCAGCAATGCTGCAGTTTCTGACTGCACTTATGTTGTATAGTTACTTGATTCCGATATCTTTGTATGTGTCCATTGAAATTGTGAAAGTTCTTCAAAGCATTTTCATCAACCAGGACTTGCACATGTATTATGAGGAAACTGACCGGCCAGCGCATGCTCGTACCTCAAATTTGAATGAAGAACTCGGCCAAGTTGATACTATACTTTCAGATAAAACAGGAACTTTGACTTGCAACTCTATGGAATTCATCAAGTGTTCTATTGCTGGGGTTGCCTATGGCCAAGGAGTTACAGAAGTTGAGAGAGCTCTATCCAAGAGAAAAGGAGAACCTATAGATCAAGAGTTGACAGAAGATGGCAATGTTCCAATTCCAAAGTCTTCCATTAAAGGCTTTAACTTTATGGATGAAAGGATCATGAATGGAAATTGGATCCACGAACCTCACGCCAATGTGATCCAGTACTTTCTGCGGTCATTGGCACTATGCCATACTGCAATACCTGAAGTTGATGAAGAAATTGGTAAAATTTCCTATGAAGCTGAGTCACCTGATGAGGCAGCTTTTGTGGTTGCAGCCAGAGAATTCGGGTTTGAGTTTTATGAAAGAACACAGACTACTATTTCACTGCACGAGTTCAATCCGATATCAGGCAAGACAACCGAAAGGTCTTACAAACTTTTGAATATATTAGAGTTTAGTAGTGCAAGAAAGAGGATGTCTGTAATTATAAGAGATGAGGAGGGGAAATTGGCACTATTTAGCAAAGGAGCAGACAGTGTCATGTTTGAACGACTAGCAAGAAATGGAAGGGAGTTTGAAGAGAAGACTAAGCAGCACATTGATGAATATGCTGATGCTGGTTTGAGGACCTTGATACTTGCGTATCGCGAACTCAATGAAGAGGAGTACAATCTATTCAATGAAGAGTTTATGGAGGCCAAGAATTTGGTGAGTGCAGACCGGGAGCAAATTGTGGAGGAAATAACAGAAAAGATTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTTCAAAATGGGGCAATTAAGGCAAGTGTTATTCATCAATTAACGAAAGGAAAGGAATTACTTTCTGAATCTGATGAAAACTCAGAGGCATTAGCTCTTATCATTGATGGGAAGTCTCTCACTTATGCACTAGAAGATGATGTAAAGGACTTGTTTCTTGCACTTGCTGTTGGCTGTGCATCTGTCATATGCTGTCGTTCATCTCCCAAGCAGAAAGCACTTATCTGCTACTTCTTTTACAAGAACATTGTCTTCGGCTTCACCCTCTTCTTCTACGAGATCTACGCCTCATTCTCAGGGCAAGCTGCATACAATGATTGGTATCTCTCACTATATAACGTATTCTTCACTTCCCTTCCTGTAATTGCCTTGGGAGTGTTTGACCAAGATATGATACTGTGGATAAGAAATGATGGACAGACAACTGATCCAGAATATGTTCATATTGTGAGACAGAGATCAATAAAACACACAACGGTTGGCTTCACAGCTCGTTTTGAAGCATCACATAGTTCGGGAGCATCTAAGAGTATTAATCAAGTCTGA 2670 0.409 MSGNRRRSRHFRRIHAFSCGKASFKGEHSLIGGPGFSRIVYCNNEAERGGGGEASSLVSYGDNYVSTTKYTVATFLPKSLFEQFRRVANFYFLVCAILSFFPVSPYSAVSNVVPLVVVVAATMGKEAVEDWRRKKQDIDMNNRNVKVHHGEGVFDYSKWKDLKVGDIVKVEKDEFFPADLILLSSSYDDAICYVETMNLDGETNLKVKQALEETSTLQEDSNYQNFKAIIKCEDPNANLYAFVGSLELEDQLYPLSPQHLLLRDSKLRNTEFIYGVVIFTGHDTKVMQNSTEPPSKRSTVEKRMDKIIYFLFFVLFLISSIGSIFFGIATREDLENGVMKRWYLRPDDTTIYFDPKKAPVAAMLQFLTALMLYSYLIPISLYVSIEIVKVLQSIFINQDLHMYYEETDRPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGQGVTEVERALSKRKGEPIDQELTEDGNVPIPKSSIKGFNFMDERIMNGNWIHEPHANVIQYFLRSLALCHTAIPEVDEEIGKISYEAESPDEAAFVVAAREFGFEFYERTQTTISLHEFNPISGKTTERSYKLLNILEFSSARKRMSVIIRDEEGKLALFSKGADSVMFERLARNGREFEEKTKQHIDEYADAGLRTLILAYRELNEEEYNLFNEEFMEAKNLVSADREQIVEEITEKIEKDLILLGATAVEDKLQNGAIKASVIHQLTKGKELLSESDENSEALALIIDGKSLTYALEDDVKDLFLALAVGCASVICCRSSPKQKALICYFFYKNIVFGFTLFFYEIYASFSGQAAYNDWYLSLYNVFFTSLPVIALGVFDQDMILWIRNDGQTTDPEYVHIVRQRSIKHTTVGFTARFEASHSSGASKSINQV 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1177 889 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 782 839 - -
Aed10g1177 889 Gene3D - 113 291 - -
Aed10g1177 889 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 713 - -
Aed10g1177 889 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 713 783 - -
Aed10g1177 889 ProSitePatterns E1-E2 ATPases phosphorylation site. 431 437 IPR018303 -
Aed10g1177 889 SUPERFAMILY Calcium ATPase, transduction domain A 151 289 IPR008250 -
Aed10g1177 889 Pfam Phospholipid-translocating P-type ATPase C-terminal 779 839 IPR032630 -
Aed10g1177 889 Pfam Cation transport ATPase (P-type) 539 625 - -
Aed10g1177 889 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 782 839 - -
Aed10g1177 889 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 839 879 - -
Aed10g1177 889 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 713 - -
Aed10g1177 889 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 839 879 - -
Aed10g1177 889 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 713 783 - -
Aed10g1177 889 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 60 715 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Aed10g1177 889 SUPERFAMILY Calcium ATPase, transmembrane domain M 58 837 IPR023298 -
Aed10g1177 889 Pfam Phospholipid-translocating ATPase N-terminal 40 110 IPR032631 -
Aed10g1177 889 Gene3D - 715 792 IPR023214 -
Aed10g1177 889 Gene3D - 438 707 IPR023299 GO:0000166
Aed10g1177 889 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 499 702 IPR023299 GO:0000166
Aed10g1177 889 CDD P-type_ATPase_APLT_Dnf-like 62 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1177 Aed-Chr10 11213799 11221219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1177 815 880 Primary Pumps ATPases AT1G68710 46.575 2.42e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1177 K01530 K14802 gmx:100797039 1303.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1177 10 11213799 11221219 Aed6g1683 6 20546734 20552642 ECH
Aed10g1177 10 11213799 11221219 Aed10g1177 10 11213799 11221219 ECH