Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1154 ATGATGAGGGAGGACGATTCGGGAGAGAAGCTAGCAGAGCTATATGAAAAACTACAGCTGATGGGATCTGATGCTGCTGAATCTCATGCATCAAAGATATTAGCTGGTTTGGGTTTTACAAAGGATATGCAAGGCCATCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGGATTTCTTTAGCTCGAGCACTTTTTGTGCAACCAACTCTATTACTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCATTGGAAGAAAACTCTGTGTATGGAAATTATTCATCTCCATGATTTGAAACTTCATTTCTATTGCGGAAATTTCAATGATTTTGAGAGAGGGTATGAACAGTGTCGTAAGGAGATGAACAAGAAGTATGAGATTTATGACAAGCAATGGAAAGCGGCTAAAAGGAGTGGAAGCCGGGCTCAGCAAGAAAAGGTTAAGGATCGGGCTAAGTTTGCAGCATCTAAGGAAAAAAGCAAGGGCAAGGGCAAGGTTGATGAGGATGAGGTCCCACCAGAGGTACCTCAGAAGTGGAGAGATTACAGTGTGGAATTTCACTTTCCTGAACCTACTGAGCTCACCCCCCCACTTCTGCAGCTTATTGAGGTCAGTTTTAGCTACCCAAACCGGGAGGATTTCAGGCTCTCAAATGTTGATGTTGGCATTGATATGGGGACTTGTGTTGCCATTGTCGGGCCTAATGGAGCTGGAAAATCTACATTGCTGAATCTTCTAGCTGGTGATTTGGTTCCTTCGGAGGGTGAAGTTCGAAGGTGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACAGCTGTGCAGTATCTTCTGTGTCTCCATCCAGATCAAGAGGGACTTAGCAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAGTTTGGGCTACCAAGTCATAACCATCTTACTCCTATCGCCAAACTATCAGGAGGACAGAAAGCTCGGGTGGTGTTCACATCTATCTCCATGTCAAAACCACACATTTTATTGTTAGATGAACCCACCAATCATCTGGACATGCAAAGTATTGATGCGTTGGCCGATGCACTCGATGAATTCATCGGTGGAGTTGTTCTTGTTAGTCATGATTCGAGATTGATATCACGTGTATGTGATGATGAAGAAAGGAGTCAAATCTGGGTTGTCGAAGATGTTACTGTCAAAAATTTCCCAGGAACATTCGATGATTACAAGGACGACTTGCTGAGAGAGATTAAAGCTGAAGTTGATGATTAA 1317 0.4366 MMREDDSGEKLAELYEKLQLMGSDAAESHASKILAGLGFTKDMQGHPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCHWKKTLCMEIIHLHDLKLHFYCGNFNDFERGYEQCRKEMNKKYEIYDKQWKAAKRSGSRAQQEKVKDRAKFAASKEKSKGKGKVDEDEVPPEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTCVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRCQKLRIGRYSQHFVDLLTMDETAVQYLLCLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFIGGVVLVSHDSRLISRVCDDEERSQIWVVEDVTVKNFPGTFDDYKDDLLREIKAEVDD 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1154 438 MobiDBLite consensus disorder prediction 149 185 - -
Aed10g1154 438 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 211 436 IPR003439 GO:0005524
Aed10g1154 438 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 4 438 - -
Aed10g1154 438 CDD ABCF_EF-3 211 411 - -
Aed10g1154 438 Pfam ABC transporter 228 363 IPR003439 GO:0005524
Aed10g1154 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 129 IPR027417 -
Aed10g1154 438 Gene3D - 178 437 IPR027417 -
Aed10g1154 438 Gene3D - 5 161 IPR027417 -
Aed10g1154 438 SMART AAA_5 237 413 IPR003593 -
Aed10g1154 438 Pfam ABC transporter 25 79 IPR003439 GO:0005524
Aed10g1154 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 399 IPR027417 -
Aed10g1154 438 PANTHER BNAA06G39310D PROTEIN 4 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1154 Aed-Chr10 10790749 10792102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1154 210 389 Calmodulin-binding Proteins AT2G36910 30.952 1.25e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1154 K06184 - gmx:100806865 760.755