Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1150 ATGGAGTCTTGGAGCTATGTTTCTGAGGAGAAAGGGTATGTCTCCAATGATTCACTTTCATCCCCCAACACCACACTTGGGAGAAACAAAGGTTCCATTTTGGGTTGGGAACTGAAAACCCCATGTGGTTTTTCCAATGACATGTTGGCTTTGGGTCATCAAAACGTTGAGAATCAAGGTTTTGGGGAGTTGGGTTTTCCAGGAATGTTGGGGAAGCACTTGTGTGGTGATCCAATTGGTGCTAATCAGAGCAGAAAGATGGATGATATGGCTGCCCCAAATGCATTTTCTCTGAGGGAGGACTTCAATTCCAAGCTCTCAAACTCTCTTGGGGACTCCAATGGTGCCAATTCACTCATTGATTTGAAGCTGGGTAGATTTGCTGACCATGGAGATGCTATGGTTCCAACATTCTGCAAGGGAACCACCCCCGTTTTGTCGCCGTCGTCGGAGTCGTCCACGCCGCCGAAGAGGGCGCGAGCCACGGCGGTGCAGTCTCAGATTGTTTACTGCCAAGTCTATGGCTGTAACAAGGATCTGAGTGGCTGCAAGGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTTCCAAAGTTATAGTGAATGGCATTGAGCAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGCAAGCGTAGCTGCCGTAAACGCCTTGCAGGCCACAATGAACGTCGAAGAAAGCCTCAAGTTGGTATTCACTCTGGAAAAGCTGGGAGGTTGCTTCAGCCATATGGTGATAGCAGATTCCAAGAGACCATGCTAACATCATCTTTTATCTGCCAAGAGATTCTCCCCAGTGGAGTCTTGTCTTCTGATAAATATGACTGGTGGAGACCTATGAAAGCTGAAGACAGCACTGATTTTACTTTCAGGCCCCTTTCTTCTTTTCCTATTACCAATGGACATTCTCATTCTCAGTCAAGATCTTTGTTTCCTTCATATAGCGGGAAACAACTTCCGTTTCTTCACAAAAACAGCGCTGCATCTGCTGCAGGAGGAAGCATCTTCTCTGAAAACAATAACCAATATCACCATCCACCTTCCCTTGGTGGCCAAAACTCTGGTTCACAGTCTCTATTCCAGGACACCTCCATAGGAAGTGAGGACTTCAATGTATTTGACACAGAATCAGCGGTTCAAGGACTGTCGGGGATTTCTGACTCTGCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAGTCCCAGAACTCGTCAAGCCAATCATCAGGGATTCCCGTGCATTGCTCGATGGTTGTTATTCCAAGCAGCAGCCATAACAGTAGCCACTACAGCATGAGTCAGGTTTCTGAAAAGATGATGGGAATAATAAGTTCACAGGCTTCTTTGAGTGGAGTGTCGGATAGGTTTCCACCTGAATTCAATCCTGCAGATGGAAGTCACCTTAGCCCTGTATTGATAGCAAACAATAACGAAATTGTCAATTTTGAAATGGCAGATGGGATCTTCCAAGTGCCGCATTTTGTCGTGAACATGAAGGATCGTCTCTCCTGTGAAGACGGCCTCACTGTTGACTTGCTCCAACTGTCATCACAACTTCAGCGCGTCGAGCATCAGAGGCAGTCCTTGCAGGTGAAACAAGAAAATGACTCTTCCTGCTCTCTGCGGATTACTTAA 1683 0.4646 MESWSYVSEEKGYVSNDSLSSPNTTLGRNKGSILGWELKTPCGFSNDMLALGHQNVENQGFGELGFPGMLGKHLCGDPIGANQSRKMDDMAAPNAFSLREDFNSKLSNSLGDSNGANSLIDLKLGRFADHGDAMVPTFCKGTTPVLSPSSESSTPPKRARATAVQSQIVYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKAGRLLQPYGDSRFQETMLTSSFICQEILPSGVLSSDKYDWWRPMKAEDSTDFTFRPLSSFPITNGHSHSQSRSLFPSYSGKQLPFLHKNSAASAAGGSIFSENNNQYHHPPSLGGQNSGSQSLFQDTSIGSEDFNVFDTESAVQGLSGISDSAGCALSLLSSQSQNSSSQSSGIPVHCSMVVIPSSSHNSSHYSMSQVSEKMMGIISSQASLSGVSDRFPPEFNPADGSHLSPVLIANNNEIVNFEMADGIFQVPHFVVNMKDRLSCEDGLTVDLLQLSSQLQRVEHQRQSLQVKQENDSSCSLRIT 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1150 560 PANTHER 1 PROTEIN, PUTATIVE-RELATED 44 560 - -
Aed10g1150 560 SUPERFAMILY SBT domain 169 249 IPR036893 GO:0003677|GO:0005634
Aed10g1150 560 Pfam SBP domain 171 244 IPR004333 GO:0003677
Aed10g1150 560 Coils Coil 528 548 - -
Aed10g1150 560 MobiDBLite consensus disorder prediction 354 378 - -
Aed10g1150 560 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 560 IPR044817 GO:0003677
Aed10g1150 560 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
Aed10g1150 560 Gene3D - 162 232 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1150 Aed-Chr10 10729749 10735876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1150 120 286 SBP-box Gene Family AT1G69170 53.892 5.14e-50 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed10g1150 SBP 5.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1150 - - gmx:100777766 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1150 10 10729749 10735876 Aed6g1648 6 20340664 20346103 ECH
Aed10g1150 10 10729749 10735876 Aed10g1150 10 10729749 10735876 ECH