Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1142 ATGTATAATCAAGTGAACCACGGTTCTCATTTCGCGCAAAGTTCCGCCCCTCCGGTGCTGCCGCCACTGCCACCGCCGCTGTATCAGCAGGCTCCATCACATTTCCATCAATTCCCACCACCACCATCTAACATTGGTGGTCCACCACCGCCGCCGCCACCTAACATTGGCAGTCCACTACCGCCTCCACCACCTCGTAATGTTTATTTACCTGGACCTCCACCTCCACCTCCTCCTACTTCATCTTCCTCAGTTCCCTTGAACCTTGCGGTTCAAGGTTCACATAATGTGATGCCAAATGCAGGACAATCCTATGTGGTTCCTCCTCAATTGCACCATGGGAACACCATGGGGCCGCAAACATCGTGGGCTCCAGGGCCACCGACTAGAGTATTGCCTCCACCACCACCGCCTCCTCTGTCGGCTTCCCAAGGACAAATTTTGTATAACCCTCCTTTCCACCATCCTCCTCTGCAGCCTGGTGATGTTCAGAATCTGCATAATGCTCCTCCTCCACCACCACCTCCTTCAGTGTATTTCCATTCAGCTGTTGGGAATTACCAAGTGCCTTCTGGTGTTCCCCCACCATTGCCATCATCTCCACCACCTGCTCTGCCGGCTCCGCCCGCATCATCATCAAATGCTGCACACACTGATGACCCTCATTCTGTGAAGGGTTCTGACTTGGAATCAAAGGTTGTGGATGTGGTTGATGGAGTTGTAGCTTCTCATTCATCTGGTGTTGTGCCTGTATATGATTCTAATTGGGATGGTGCAAGTTATAGAGAAGTTGGTGGTGCTGACAGAGATGAGGATCTCCTCCCACCCAAGCCAACAGAAGAAGAAACTGTGCAGAAGATTGAAGCTTTGTGCCAGCTTATTGCCAAGAATGGCTCTGATATTGTAGATAAGGTTCGTCGAGATGAATTTCAGAATCCTGAATATGCATTTTTGTTCGGTGGAGACCCAGGAACTGATGCTGCAATTTCTCACACTTATTTCCTGTGGATGAAGAAGAAGTATAATTTGGATACTGAATGGCATGAAAAGAAAAGGCAATCAGAGATAGTATACTCTTCAGGGAAACAGTATCATCTGCATGTTACAACTGTGAGTGCCGATTCTGACATGGAAATGGAAGATGATATCACACTTTCTGACAAGGACCAAGGTTCAAATTATGCAACTGAAGCCCTAACTCAGCAACATAATCAAGATGACGAAGTGTTTAGCGTGAATCAAAATATACAGCAGATGCGGAGTTTAACAGAGAATGACCCAGCCAAGGACATCTCATCCTGTAGTGCATCATACTTAGGATCCATGGGAGTCAGCAAACAGAATGAAGGACCAGAGATTTTGCCTGATTCTGAGCACATGAAATATGTAAGATCAGTTACCAAGGTTTGTAGTCTTGTGAGTGACTCCACTAAAGTGGTTGAATTACCCCTGGGCACAGCTTTGGAGAAATCTACAGCTCCTGTAAATGATGATTTCACACGTACTGGCACTTCTGATCACAATGAAACCACTACTTCTGATAGAGATTCTGGGCTACTCATAAGGAGTGGTAGCCCAATAAAACTTCTTCAAGATTATGCTTCTGATGACACTTCAGATAATAAAGATGAAGGCAATGCTGCAGATGCTAAAGTTTTCACTGTCTCAGGAGGTGCTGACACTGGTGTTTCAGCTGCACATAAGGATTCTGGGAGTTATATGGAGACTGATATTGGATCTAAGAGTCCCTCCAGTGCCCAAATGGGGTTTGGGCCACTCTCCAGAAAATCACTGGATGATTCAGAAATATCTCCACATTTATTACGAGAGCCAAAGGAAACCCGTTACCGTAAAAAATATGTCTCACGATGGAGTAGTGATGGATGTATTGAGCATCATCTTGAAAATCAGGTGTCTGCTTTAAAGGGCAAAGATGGATTAGAGAGTACTGGCATTGACCATGGTAGCAAAAGTGGTAATGCTGAAAAGGAAGAGGTGGGGAAAACCTCAAAGTTAGAACCGAATGTTTTGAAAGTAGATGAATTCGGAAGACATCTCAGAGAAGGTCTTACAGATAGTGACTCTGATGATTCACGCCATCATCGGACAAGGAGACTAAACAAAAGAGATAGAAGCTGGAGTCGCAGCCAGTCTCCTCCAGACAGGAGGAGTAGGAGAAATAGGAAGAGTCCCCGGAGGAGAAGGGATAAAAGAAACAGGTCTCGCAGCTGGTCCCCCCGGCACCGAAGAAGCAGGAGTAGGTCTCCAATCTCAAGACGTTCAGGTGACTTTCGTGGTGAGAATGTGAAAAGGGACAAGGATCAATGCTTCGACTTCCTTCGAGGAAAGTGCTATCGAGGAGCATCTTGCAAGTACATTCACCATGAATCTGACATGAATGCTACTTCAAGGCGCTATAGGAATAAACATGATCTGGGAGGAAGTTCTCATGCAAAAGAATCTAAGATCAATGGAGACGTGAAGAAGATTTCTTCCAAAGTGTTGGATAATGAGCGTGATGGAGTCAGAAGTCAGGATGTGGATTTTTGCCAGAATGTACCTAGCCAGGAAGTAATGAAGAAAAAAGAAGATTCAGGGAGGCATGCTGTTGCACCAACTACCATTCATCTTGATGGTCAATCAGTTAATAGCAATCCAAGTAAATCTGAATGCATCAGAGAGGTTGCTCCTGAAATGCAAGAAACCATAGCAGTCATGGAGGAACCTAAGACTTTAATCCATGAAAATGATGGTTTGAAAGCAGGGGATTCTCATCAGCAACACTTAGTTGATGGCTTTCACCCTGAAGCTTTGGGAAGTGGTGATGCTTTTAAACCATCTGGTACATGTAAAGATGTCATTCCCTCAGAAGATGGTTCATTTGTTCAGGAAACACAACTCAATGCTTCTGTGGTTGGAATTCCAGAACATTCTGGGTATGTGTCTCAGCATGTAAATGCATCTTTTGTGACTGATTCATCACCTGATAAAAGATCAATTGTTTCTGCTAGGGTTAATGAAGCTCCTGGTAGTGAACTGTTACCATATATTTTATCATCAACTCAGCTACAGTCAGCCACTAGTTCTGTTGGGCAATGTGTCACATCAGAGCAGCCGTCATTGCACTCTCAGGCTTCTAAAGAGTTACCTCTACAGAGTGGTTCTTCAGTGGGATTACCGCCTCATACCTCCCAGTTGCCTGCTTCTGCTGTTTCACATTTCCAGGGTGAAAATCCTGTGCATATGCCCCAAATTTCAAGGCAGTATGGTCTGATGCAACAAAGTGCATTCTTTCCTTTCCAATCCACTACCAGAGAAAAGTTTGAACCTTACCCAGCTCCATTACACATGCAGAATGCTCACTTCAATTTACCACCTAATACCTCTTGGACATCCTTGCCACTGCCGCCACCACCGCCACCACCAAGTGTGGTGTATAATTCCAGTTTAAACTCAGGAGTTGTAAAATCATATAGTTCTTCTGAATTCAATCAGAGTCAGTTGCATTCAAGAACTGACTTTGTTCCTCAGACTTCCATGAAGCCTGGCCTACCATCTGGTTCTCAGAATTCTGAATTTCAGGATCAAGCATACCCTCCAATGCAGGATCATTCACAAGCTTTCATGCTTACAGAACCTTTCTCTCCAAAGCATCTCCCTCAGGGGAACCCAGCTAGTCAATTGCCTTCAAGCTCTAATCTCAATAGAGATGACTTTCATAATCAACTTCCTTTGCAGGATTCAAAATTTTCAAGTACCACATCATTAGGCAGCCTGCAGCAGCCTCAACCAAATCAATTTTCCTGGAAGATGGATGTGAACAGACTACAACCTACTCTGGGTGGCAAGTTGCCTCCTGAAGGACATCTTATGACATCTTCCGACATTGATTCATTATCACAGAAGCAACAATCAATGTATAATTTTCAAAGTTCTGTATCCGAGGCTAATTTGGGTGTGCCTGGGGAGACCGCTACTATTTCAAGATATCCACCTGATTTTCTGGATAGCAATCATTCAACTTCTCTTCCATCTTTTGGGGGATCAAGAATAATATCGGCTCACTATAATCCTTATGCATCAACCTTTGAGAAACCACTAAGTTCCAAATTCAGTTCCAGTATTTTTAGACAGGAAAATGAAATAACCCATGCTCACAATTATACTTCTAGATTGAACCATACTCCTGTAAATGGGGAAGGTGGGGTTGGATCAAGACAGTCAGCTTCTTCATCAAAATCAGCTAGAGCTCTTGGTCAGATTTTACCTAGGTCTGGTGGTGACCAATATGACCCACTTTTTGACAGCATTGAACCATCATCCTCTTCTTTGAAAAAAAATGATTTTGATCACAAGCAGGAAGTTACAGGTGAATCCAACATCAGCCTAAGGCCCAAAAGTTCTTACATGTCATTGGATGCAGATGAGAAGGACAAGCATGAGGAGGTTGGGGCTGTTGCCTCTACCACTTCTCAAAATAATGATGAATATGGTGAAACAGCAGATGCGGAAGTTGGTGCTGTTGATGATGAGAGCCTAAGTGATGACATGGATGCTGCAAATATGACTTCAGGGGAGGTTGAGATTAATCAGGGCAAGTCTCCTGGGAAAAGAAAAAAGAGTAAGGATTCCAGATCAATGAAATTGTTCAAAGTTTCCATTGCGAACTTTGTAAAGGAGGTTTTGAAACCATCATGGCGGCAAGGTAATATGAGTAAGGTGGCTTTCAAAACCATTGTGAAGAAGACTGTGGATAAAGTGTCAGGAGCCATGAAAGGCCACCGTGTACCCAAGTCCCAAGTGAAGATAAGTCAATATATTGATTCATCACAGCGAAAGTTGACTAAACTTGTGATGGGCTATGTTGACAAGTATGTCAAGGTATGA 4887 0.4395 MYNQVNHGSHFAQSSAPPVLPPLPPPLYQQAPSHFHQFPPPPSNIGGPPPPPPPNIGSPLPPPPPRNVYLPGPPPPPPPTSSSSVPLNLAVQGSHNVMPNAGQSYVVPPQLHHGNTMGPQTSWAPGPPTRVLPPPPPPPLSASQGQILYNPPFHHPPLQPGDVQNLHNAPPPPPPPSVYFHSAVGNYQVPSGVPPPLPSSPPPALPAPPASSSNAAHTDDPHSVKGSDLESKVVDVVDGVVASHSSGVVPVYDSNWDGASYREVGGADRDEDLLPPKPTEEETVQKIEALCQLIAKNGSDIVDKVRRDEFQNPEYAFLFGGDPGTDAAISHTYFLWMKKKYNLDTEWHEKKRQSEIVYSSGKQYHLHVTTVSADSDMEMEDDITLSDKDQGSNYATEALTQQHNQDDEVFSVNQNIQQMRSLTENDPAKDISSCSASYLGSMGVSKQNEGPEILPDSEHMKYVRSVTKVCSLVSDSTKVVELPLGTALEKSTAPVNDDFTRTGTSDHNETTTSDRDSGLLIRSGSPIKLLQDYASDDTSDNKDEGNAADAKVFTVSGGADTGVSAAHKDSGSYMETDIGSKSPSSAQMGFGPLSRKSLDDSEISPHLLREPKETRYRKKYVSRWSSDGCIEHHLENQVSALKGKDGLESTGIDHGSKSGNAEKEEVGKTSKLEPNVLKVDEFGRHLREGLTDSDSDDSRHHRTRRLNKRDRSWSRSQSPPDRRSRRNRKSPRRRRDKRNRSRSWSPRHRRSRSRSPISRRSGDFRGENVKRDKDQCFDFLRGKCYRGASCKYIHHESDMNATSRRYRNKHDLGGSSHAKESKINGDVKKISSKVLDNERDGVRSQDVDFCQNVPSQEVMKKKEDSGRHAVAPTTIHLDGQSVNSNPSKSECIREVAPEMQETIAVMEEPKTLIHENDGLKAGDSHQQHLVDGFHPEALGSGDAFKPSGTCKDVIPSEDGSFVQETQLNASVVGIPEHSGYVSQHVNASFVTDSSPDKRSIVSARVNEAPGSELLPYILSSTQLQSATSSVGQCVTSEQPSLHSQASKELPLQSGSSVGLPPHTSQLPASAVSHFQGENPVHMPQISRQYGLMQQSAFFPFQSTTREKFEPYPAPLHMQNAHFNLPPNTSWTSLPLPPPPPPPSVVYNSSLNSGVVKSYSSSEFNQSQLHSRTDFVPQTSMKPGLPSGSQNSEFQDQAYPPMQDHSQAFMLTEPFSPKHLPQGNPASQLPSSSNLNRDDFHNQLPLQDSKFSSTTSLGSLQQPQPNQFSWKMDVNRLQPTLGGKLPPEGHLMTSSDIDSLSQKQQSMYNFQSSVSEANLGVPGETATISRYPPDFLDSNHSTSLPSFGGSRIISAHYNPYASTFEKPLSSKFSSSIFRQENEITHAHNYTSRLNHTPVNGEGGVGSRQSASSSKSARALGQILPRSGGDQYDPLFDSIEPSSSSLKKNDFDHKQEVTGESNISLRPKSSYMSLDADEKDKHEEVGAVASTTSQNNDEYGETADAEVGAVDDESLSDDMDAANMTSGEVEINQGKSPGKRKKSKDSRSMKLFKVSIANFVKEVLKPSWRQGNMSKVAFKTIVKKTVDKVSGAMKGHRVPKSQVKISQYIDSSQRKLTKLVMGYVDKYVKV 1628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1142 1628 Gene3D - 769 853 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 17 83 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 1486 1508 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 1213 1268 - -
Aed10g1142 1628 PANTHER EXPRESSED PROTEIN 1 1628 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 1175 1197 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 494 521 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 710 724 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 126 142 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 1220 1268 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 641 767 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 725 755 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 566 614 - -
Aed10g1142 1628 ProSiteProfiles Zinc finger C3H1-type profile. 770 797 IPR000571 GO:0046872
Aed10g1142 1628 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 1628 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 1034 1066 - -
Aed10g1142 1628 SUPERFAMILY Surp module (SWAP domain) 274 341 IPR035967 GO:0003723|GO:0006396
Aed10g1142 1628 MobiDBLite consensus disorder prediction 1523 1545 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 647 703 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 1 227 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 575 591 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 1386 1468 - -
Aed10g1142 1628 Gene3D Surp module 282 342 IPR035967 GO:0003723|GO:0006396
Aed10g1142 1628 MobiDBLite consensus disorder prediction 799 825 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 84 103 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 1386 1418 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 599 614 - -
Aed10g1142 1628 MobiDBLite consensus disorder prediction 191 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1142 Aed-Chr10 10642480 10651008 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed10g1142 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1142 - - gmx:102668322 2411.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1142 10 10642480 10651008 Aed10g1142 10 10642480 10651008 ECH