Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1125 ATGTGGTGTGCAGAATATAGCTTCAGTGTTTGTGGTTTTGCTCAGGTTGCAGGAATGGCTTTCTTTGGCAGAGTTGGGAATATACTGAGACAAGCAACGAATAGGAGGATCGGTTCCGAGTTATGCTCTTTCCCATCTGTTTTCCAGGCTACACGGTGCATGTCAAATGCTCCAAATCCAAGGCTGTTTATAGGAGGTGTTTCATATTCTATTGATGAGCAAAATTTGAGGGAAATTTGTTCACAACACGGCCAAGTTGTTGATGCGAGGATAGTTATGGATCGTGAAACTGGTAGGCCCAGAGGATTTGGTTTCATCACTTACAGTACAGTTGATGAGGCATCACGTGCCCTTCAGGCCATGGATGGACAGGATCTTGGCGGTCGTAGGGTAACGGTGAATTATGCTACTGACAGACCCCGTGGATTTGGTGGTGGTGGCGGCTTTGATGGATCTTATGGCAATAATCCCTATGGTGCTGCAAGTGGTGAAGCTGGTGCCTATGCTAGCAATGCTGCTGGAGGTTATGGCAACAGTGGATATGGTGGAGGATCTGGCAGTGATGCTGGTGCCTATGGTGGCAATGCTGCTGGAGGTTATAGCACTGGTGGATATGGTGGAGGATCTGGCAGTGATGCTGGTGCCTATGGTGGCAATGCTGCTGGAGGTTATGGCACTGGTGGATATGGTGGAGGATCAGGTGGTGATGCTGTTGCCTATGGTAGCAATGCTGCTAGTGGTTATGGCAATGGCGGTGGAAGATCGGGTGGCAGTTTTGGGGACAGCAGCTCTGGCAAGAACTTTGGTGATGCTGGGACCTATGGTGGCAATGCTGCCAGAGGTTATGGCAACGGTGGATATGGTGGAGGATCAGGTGGCAGTTTTGGGGGCAGCAGCTCTGGCAATAATTATGGTGCTGGTGGTGGTTACAATGGAAGTGGAACAAGTTATGAGAATGCTGGCAGCTTTGCAAGCGGTAACACTTACAACGGTGGAATAGGTGGAGGTTATGGTGGTAACCGTGGGAATTATGGTCCTGCTGTGGGTGGTGAAGGTAATACCAGTAACCATGGTAGTAGTACTCCTGGTCGTAGTTATGATAGCTATGGTGGTGGTGCTGCTGCTCCCAGATTTGGCAAGAATAGTGATTATGCCAGTTCCACAGGATTTGGTAGCAGCGGTAGCTATGGTAGTATGGCTGGTGGTGGCAGCAGCCAGAGTTTTCCCAGTAGTCAGCACCTCAGAAGTGCCTCGGCATATGGCAGTGCTGGCAGCCAGAGTTTTGCTGGTGGTGAATGCCCCGAAAATGCCAGCGACGGTACGGGTACTGGCAGTGGCTTTGCTGGTGGATATCATGGCAACAGTGGCCAATTTGGTGGTAGCAATCAAAGCAGCAATGCGGCGGGTCGACATGGTGGAGATTTTGGAGGCCCCTGTGAAGTAAATTTCAAGAATGGTGATTATGAAAATGATGCCTTCGCTGAACGGGCTTGA 1494 0.5013 MWCAEYSFSVCGFAQVAGMAFFGRVGNILRQATNRRIGSELCSFPSVFQATRCMSNAPNPRLFIGGVSYSIDEQNLREICSQHGQVVDARIVMDRETGRPRGFGFITYSTVDEASRALQAMDGQDLGGRRVTVNYATDRPRGFGGGGGFDGSYGNNPYGAASGEAGAYASNAAGGYGNSGYGGGSGSDAGAYGGNAAGGYSTGGYGGGSGSDAGAYGGNAAGGYGTGGYGGGSGGDAVAYGSNAASGYGNGGGRSGGSFGDSSSGKNFGDAGTYGGNAARGYGNGGYGGGSGGSFGGSSSGNNYGAGGGYNGSGTSYENAGSFASGNTYNGGIGGGYGGNRGNYGPAVGGEGNTSNHGSSTPGRSYDSYGGGAAAPRFGKNSDYASSTGFGSSGSYGSMAGGGSSQSFPSSQHLRSASAYGSAGSQSFAGGECPENASDGTGTGSGFAGGYHGNSGQFGGSNQSSNAAGRHGGDFGGPCEVNFKNGDYENDAFAERA 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1125 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 131 IPR000504 GO:0003723
Aed10g1125 497 PRINTS Eggshell protein signature 203 214 - -
Aed10g1125 497 PRINTS Eggshell protein signature 306 316 - -
Aed10g1125 497 PRINTS Eggshell protein signature 281 296 - -
Aed10g1125 497 PRINTS Eggshell protein signature 331 349 - -
Aed10g1125 497 Gene3D - 45 154 IPR012677 -
Aed10g1125 497 SMART rrm1_1 61 134 IPR000504 GO:0003723
Aed10g1125 497 MobiDBLite consensus disorder prediction 455 469 - -
Aed10g1125 497 SUPERFAMILY RNA-binding domain, RBD 57 161 IPR035979 GO:0003676
Aed10g1125 497 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 19 197 - -
Aed10g1125 497 MobiDBLite consensus disorder prediction 349 366 - -
Aed10g1125 497 MobiDBLite consensus disorder prediction 418 497 - -
Aed10g1125 497 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 19 197 - -
Aed10g1125 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Aed10g1125 497 MobiDBLite consensus disorder prediction 418 443 - -
Aed10g1125 497 MobiDBLite consensus disorder prediction 348 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1125 Aed-Chr10 10393005 10396785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1125 9 201 Eukaryotic Initiation Factors Gene Family AT3G16380 27.136 3.14e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1125 K12741 - gmx:100801928 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1125 10 10393005 10396785 Aed10g1125 10 10393005 10396785 ECH