Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1090 ATGGAACTCACCGAAGAACAGCTTCGCCAAGTAGAAGCAAACCGCGCCGCAGCCATCGCAAAACGCAAAGCATTCTTAGAATCCAGAGAACAACTTCAACAACAACAGCATCACGAAGCACAAAACAACAACCCATGGCACCTTTTCAAATGCCAAAAATTCCCTCTTCCCCCCAAACCCCAACCCCCAAAATTCCTCGCCCGCCTCGAAATATGCTCCCCCGATTCCTTCTCCATAACCCCTCTCCCTCTCTCCTCCTTCCGCTTCCCCGGTCACCAACACTGTTTCTTCACTCTCAACTCCATTCTCTCACAACAAGTGGCGCCTTCGCATTACACGCAGACCAGCGAGGGCGAGAAGGTCTGCGTGTTCAAGCTGCTCGAGTACCGCGCCGTGCTGAAACAGTTGAAGACGGTCGCCGCGGCGGATGTGCTGCAGGTGGAGGAGGTCCCCTGGGCGACGTTCAACGTAATGGAGCGCCTCTCGCAGTGGCGCTGGACGCCCGTGCGGCCCGAGCACCTGCCTGACGACGAGGTGGACCGCCTCGTCGGGAGGCTTCCGGGGGCTCTCCTGGAGAGGCTGCTCCCTTTCCAGCACGAGGGATTGAGGTTCGCGTTGAGAAGGGGCGCGAGGTGCCTCATTGCCGATGACATGGGACTCGGGAAGACGCTCCAGGCTATTGCTATTGCAGGGTGTTTTGTGGAGGAAGGGTCTATACTTGTGGTTTGTCCGGCTGTGTTGCGGTATTCATGGGCAGAGGAATTGGAGCGCTGGCTTCCTTCGTGCTTACCGGCTGACGTCCATCTCGTTTTTGGCCATCAAGACAACCCTATATATTTAACAAGAAACCCCAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGAACGTGAATGGGCTCTCCTGATTGTTGATGAATCTCATCATGTGCGATGTACGAAGAAAACAGAACCAGGAGAGATACGGGCTGTTCTCGACGTGGCTGCGAAAGTGAAGCGTATAGTTCTGCTATCAGGGACACCTTCTCTGTCAAGGCCTGGTTTGCTGGGGAAGACCAAATATGAGTTTGCAAAAACATATTGCGATTTAAAATATATCAAAGGCATCCAAGGGAAAGTTTTTGCGGATTATTCAAAGGGTGTGCGCTTGGAAGAGTTGAACGTGTTACTAAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGATGCTACAGTTACCTCCAAAACGCCGGCAAATTATAAGACTCTTGATAAAAAGATCGGATATAGTTGCTGCAAAAACTGCAGTTGGGGTATTCAATATTGATGCCTCTGAGAGGGAAAGTGAAGACATGCCTTTAGAAAATTTGGATGAACCTGATGGAATGCTTTCTTATCAGGAGCTTGGAATTGCAAAGCTTTCTGGTTTTCGTGAATGGATTTCCCTCCATCCAATCATTGCAGGATCAGAGAATGCTTCAAAAATGATAGTTTTTGGTCATCATCACAAAGTTCTTGATGGAGTACAGGAGTTTTTATGTGAGAAAGGCATAGGTTTTGTGCGAATTGATGGAAATACTCTTGCCAGAGATAGGCAATCAGCAGTAGTCTCATTTCGGTCATCACCTGAGGTTAAAATTGCGATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAGCAGCACAGGATGTTGTGTTCTTGGAGCTACCAAAGTGCCCAACTATAATGCTCCAGGCTGAAGATAGAGCTCATCGTAGGGGACAAACAAATGCAGTTAATGTTTACATATTCTGTGCAAAGGATACCTTGGATGAATCACATTGGAAAAATTTGAACAAAAGTTTGCAACGTGTTTCATGTACAACTGACGGAAAATATGATGCAATGAGAAAGATTAAGGTTGAAGGTATTTCTTATTTAGACTCATCTTTAAAAAGTGACAATTGTGAAGAGCAATCTGTGTGCAAGGATGCAGTAGGTGAAACACGATTGGATAAGCAACCTTCTACAGTAAATTCAAGTGAATCAGAAGCAAACCAAGATGATAAATCTGATGAAGAAACTTTTGTTAATAACTCAAGTCTGAGTTCTAATATTATGGCTGATAATATTTCCTGCCAAGATTTAGGCAAGGCTTCAGTTCTGGATGGAACTTGTGATGTTGGTGTTTTTTATGCTGTGGAGAGATGTCTCGAAAAGAGTTTTGAAGACAGAGATCAAGTAGTACAGGATATGAAATCAGTTCCAACAACAGAAGCAGATGACAACCAGTCTGTGAATGCGGTTGAAGCCAATAGACATTGTTCTAATCAAGTTGATTTTCTGCGATTTGAGGTGAGCCCATACACTGGAAGGATCCACTTGTATACTTGCATTATGGGTACTGATAAAAGACCACGGCCACTTTATGAAAATTTTCGACCAGAGGAACTTGAGTTGTTAAGTTCTGTTGCTGATGATGAGAAACAGGGGCATGATGAGAAACAGAAAGCAGAGTTTGTATCTGTCAAGGACAACCCTGCCTACAGGCATGCTCTTCTAACTTTTGCGGAGGAGTGGAAGAACCTGAGGTCAATTGAACGCAGGAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTTGAATTATGCTACTTGAGTGAAAGCAATAACCACAACAACAAGGGATTATTAAATGGTGGAAGTAAAAGACGCAAGACACCCTTAATGGAGATTAGCTATCCTTTACCATCGGAGGCTGTTTGGAGAAAGGTTTATCTGCGAAGTGGCCGAGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGTGTGACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAGTGCCTGGGTAACAATGCCAATAAACCTGAATTTTTTGAAGATCTTTTTTGTAACCTTGTCTGCTATGAGGAATATCGTATGAGAACTAGCAATAGATTCCTCCGTGAGGAACTTTTCAAAATTGAACATGGTGTGTGCACAAATTGCCAATTGGATTGTCATAAGCTTGTTGAGCAAATAAGACCATTGTCATTGGAAAGGCGTCGAGAGTACATAGAGAAAGTAGCACCAAATGTTTCTAAACTGAAGAACAAGGTTGAGAAGCTTGTCAATGAACCAACTGAAGGCAATGCATGGCATGCTGACCATATTGTTCCAGTATATCAAGGAGGAGGTGAATGCAAGCTGGAGAATATGAGGACTCTCTGTGTGTCCTGCCATTATGATGTTACTGCTGCACAATGTGCTGAACGACGCATAGAAAGAGCAAATGCCAGGAAACAATTAAAAGCATTAATGAATAGTGTGAAAAATGGTATTAAGGGTGCTGTTGGCACTGATATTAAGGTCCCTAGACTTCTCGACGAAGAAGGGCTTTTAGTTGAGGTTCCTGGCAGTGCCTATTCTTTAGCAAACAACTAA 3444 0.4443 MELTEEQLRQVEANRAAAIAKRKAFLESREQLQQQQHHEAQNNNPWHLFKCQKFPLPPKPQPPKFLARLEICSPDSFSITPLPLSSFRFPGHQHCFFTLNSILSQQVAPSHYTQTSEGEKVCVFKLLEYRAVLKQLKTVAAADVLQVEEVPWATFNVMERLSQWRWTPVRPEHLPDDEVDRLVGRLPGALLERLLPFQHEGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFVEEGSILVVCPAVLRYSWAEELERWLPSCLPADVHLVFGHQDNPIYLTRNPRVVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTKKTEPGEIRAVLDVAAKVKRIVLLSGTPSLSRPGLLGKTKYEFAKTYCDLKYIKGIQGKVFADYSKGVRLEELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLIKRSDIVAAKTAVGVFNIDASERESEDMPLENLDEPDGMLSYQELGIAKLSGFREWISLHPIIAGSENASKMIVFGHHHKVLDGVQEFLCEKGIGFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSAAQDVVFLELPKCPTIMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLQRVSCTTDGKYDAMRKIKVEGISYLDSSLKSDNCEEQSVCKDAVGETRLDKQPSTVNSSESEANQDDKSDEETFVNNSSLSSNIMADNISCQDLGKASVLDGTCDVGVFYAVERCLEKSFEDRDQVVQDMKSVPTTEADDNQSVNAVEANRHCSNQVDFLRFEVSPYTGRIHLYTCIMGTDKRPRPLYENFRPEELELLSSVADDEKQGHDEKQKAEFVSVKDNPAYRHALLTFAEEWKNLRSIERRKLLGKPLQLPLAVELCYLSESNNHNNKGLLNGGSKRRKTPLMEISYPLPSEAVWRKVYLRSGRGKKEKEYTQGWSVTDEPLCKLCQKQCLGNNANKPEFFEDLFCNLVCYEEYRMRTSNRFLREELFKIEHGVCTNCQLDCHKLVEQIRPLSLERRREYIEKVAPNVSKLKNKVEKLVNEPTEGNAWHADHIVPVYQGGGECKLENMRTLCVSCHYDVTAAQCAERRIERANARKQLKALMNSVKNGIKGAVGTDIKVPRLLDEEGLLVEVPGSAYSLANN 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1090 1147 Gene3D - 976 1110 - -
Aed10g1090 1147 Pfam Helicase conserved C-terminal domain 491 591 IPR001650 -
Aed10g1090 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 405 IPR027417 -
Aed10g1090 1147 SMART helicmild6 508 591 IPR001650 -
Aed10g1090 1147 Coils Coil 1 21 - -
Aed10g1090 1147 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1108 - -
Aed10g1090 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 644 IPR027417 -
Aed10g1090 1147 CDD SF2_C_SNF 473 602 - -
Aed10g1090 1147 CDD HNHc 1045 1085 IPR003615 -
Aed10g1090 1147 SMART ultradead3 190 373 IPR014001 -
Aed10g1090 1147 MobiDBLite consensus disorder prediction 664 694 - -
Aed10g1090 1147 Pfam HNH endonuclease 1051 1082 IPR002711 GO:0003676|GO:0004519
Aed10g1090 1147 Pfam SNF2-related domain 211 427 IPR000330 GO:0005524|GO:0140658
Aed10g1090 1147 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 483 637 IPR001650 -
Aed10g1090 1147 Gene3D - 192 357 IPR038718 -
Aed10g1090 1147 Gene3D - 446 693 IPR027417 -
Aed10g1090 1147 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 366 IPR014001 -
Aed10g1090 1147 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1090 Aed-Chr10 9925813 9939379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1090 496 609 RAD5 or RAD16-like Gene Family AT1G11100 41.228 7.93e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed10g1090 SNF2_N 4.5e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1090 K25861 - gmx:100788690 1979.53