Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1088 CTAACCGTACCAACAGTAGCAACTGCTAATTTCATTCACACATGGAATATTTTCAGGTCTAATTATGGCGATATTGCAGAGCTGGTATGGGAAAATGGGCAGCTATCGATGCATAGGCTTGGTGGGCTGCAACCTACTGCCCCTACTCAGGAAAAGCCCATACTGAGTAGGGCCCACGACACATTAGAGTCTATTGTTCAACATGCGACGTACCAACATCGTTATCAACCGTCAAAAGACCATCATGCCCCTATTTGTAAAAACAAGTCCAATAATATTTGTGCACCAGCACCACCCTATGGTGAAGTTCAAGCTATGGCATCGTCATCGACGAGGAAAAGAACATGGTCCAACGCTAACAACAACATGAACAAGTTGGAAGAATGTGGTGACATTCTGAGTGGCTGTTGTAGGGACAATAATGATACAACCACGATGACGTGGCGGGTTTCTCTTGAATCTGGTCGGAGCTTGAAGAACTGCAAGGAGGAAGATTCAGCTTGTCACTGTGGATCGGAAATTCGAGACAACCAAAATGAAAGAGACAGCAAAGCAGAAGCAGGAGGCCAAAGCAACTCAAAAAGACGAAGTCGAGCTGCTGCCAATCATAACCAGTCTGAGCGGAAAAGAAGAGATAGAATTAATCAGAAGATGAAAGCCTTGCAGAGGTTGGTGCCTAATGCAAATAAGGCAGATAAAGCATCAATGTTAGATGAGGTGATAAAGTACTTAAAGCAGCTTCAAGGACAGATCCAAATGATGAACATGACAAGCATGCCCCAAATGATGAACATGCAGCAGCAACAACAGCAACAGCAGCTTCAGATGTCAATGCTAGCAGCCAGAATGGGAGCTGCTGGGCTTGGCATGGTGAACATGGCAGCAGCAGAAGCCCAAACAGGCCCAACATCACTCATTCAACCACCTGCCACTGCCCCTATGTTTGTTTCCCCAGCTTCCTTTATGATGCCACATTCCATGATGATTCAATCACCTCCCCAACAACCTGCATCATCCTCATTTCCTATGCCTCATCCATATACTGCTCTCACCCAACCAATTAACATGGATATTATGAGCAACATGGCAGCACTTTATCAGCAACAGATGAGTCAGAACAATCATCAAGGCTTGAGCAGCAGCATCTTCCAACAACACCATGAGCAAGGTCGTTGA 1176 0.4549 LTVPTVATANFIHTWNIFRSNYGDIAELVWENGQLSMHRLGGLQPTAPTQEKPILSRAHDTLESIVQHATYQHRYQPSKDHHAPICKNKSNNICAPAPPYGEVQAMASSSTRKRTWSNANNNMNKLEECGDILSGCCRDNNDTTTMTWRVSLESGRSLKNCKEEDSACHCGSEIRDNQNERDSKAEAGGQSNSKRRSRAAANHNQSERKRRDRINQKMKALQRLVPNANKADKASMLDEVIKYLKQLQGQIQMMNMTSMPQMMNMQQQQQQQQLQMSMLAARMGAAGLGMVNMAAAEAQTGPTSLIQPPATAPMFVSPASFMMPHSMMIQSPPQQPASSSFPMPHPYTALTQPINMDIMSNMAALYQQQMSQNNHQGLSSSIFQQHHEQGR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1088 391 MobiDBLite consensus disorder prediction 173 214 - -
Aed10g1088 391 Gene3D - 193 258 IPR036638 GO:0046983
Aed10g1088 391 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 19 384 IPR031066 -
Aed10g1088 391 MobiDBLite consensus disorder prediction 200 214 - -
Aed10g1088 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Aed10g1088 391 MobiDBLite consensus disorder prediction 173 191 - -
Aed10g1088 391 CDD bHLH_AtPIF_like 198 256 - -
Aed10g1088 391 Pfam Helix-loop-helix DNA-binding domain 201 248 IPR011598 GO:0046983
Aed10g1088 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 269 IPR036638 GO:0046983
Aed10g1088 391 SMART finulus 204 253 IPR011598 GO:0046983
Aed10g1088 391 PANTHER TRANSCRIPTION FACTOR PIF7 19 384 - -
Aed10g1088 391 Coils Coil 204 231 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1088 24 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 39.286 5.19e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed10g1088 HLH 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1088 - - gmx:102667566 411.764