Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1081 ATGAATTGCCTCAGAAATCATTGCAGAGGAAATAATTTAGCTGAAGAGATGGCTAGTAACAGTGGGAAGCATGAAAATACAATGTCAGTAGAGCTTGCAATCCAGAGGGAGTTAGAATATAGGAAAATTGTAGCAGCATTTCACTCTCGCCCAAATACTAAATTCACTGAAGAGGTTAAAACATCAAATGATGGTTTCTGCCCAAAGCTATTGCCAGGTCCAAGTTCAATGAAATTTCCAAGTCTTTCAGGAACTAAGCAGAAGGAATCACCAACAAGAAGTACTCATCATTTGCGTCTAAAACATCCGCAACCATTTCATGGAAGTCTCAATCATGAAGTTCAGATTGGACCCTGGGATTTGAGTCTTAATGTTAAATCATCAAATGATGCTTCCCTCCCAAAGCCATTGCCAGGTCTAACTTCAATGAAAGTGTCAAGCCTCTCAAGAACTAAGCGGAAGGAATCACCAGCAAGAACTACTCATTGTCCGCGTCTACAACATCAACGACCGTTTCATGGAAGTCTCAATAATGAAGTTGTTAAGACAGGAGACTGGGATTTGAGTCTTAAACTTAAATCATCAAATGATGCATCCCTCCCAAAGCCATTGCAAGATCCAAGTTTAAGCAAATTCTCAACCCTTTTGGGAACCAAGGGGAAGGAATCATTGACAAGCTTTCATCATTCGCGTCTACAACATCATCAACCATTTCAAGTAAGTCTCAATCATGGAGCTAAGCCTGATGGTGTATACTGCAAAATTTGCCAAGTCTCTTGCTCAAGTCCATTCAATCTCAAGCAACACTTGAGAGGTCACAAGCACAAACAAATGTTGCAAAAGGGCGAAAGAAATAGTCAGATGCAATGGTGTGAAGTGTGTAGCATTACTTGTACGAGTGAAGATTTGCTCAAAATGCACCTTCAAGGCCAAAAGCACAAGGCTAAATTGCAGATGTTGGAAATCAGCAAGCAAGGTGTGGAGGCTCCAAACAAGCCAAAATGGTGTGCACTCTGCAAGTTATGGTGCGGTGACGAGTTTGCCTTCAGGCTGCACCTTGCAGGTAAAAAACACAAGAAAGAAAATGAGAGATGGCTGTAA 1101 0.4133 MNCLRNHCRGNNLAEEMASNSGKHENTMSVELAIQRELEYRKIVAAFHSRPNTKFTEEVKTSNDGFCPKLLPGPSSMKFPSLSGTKQKESPTRSTHHLRLKHPQPFHGSLNHEVQIGPWDLSLNVKSSNDASLPKPLPGLTSMKVSSLSRTKRKESPARTTHCPRLQHQRPFHGSLNNEVVKTGDWDLSLKLKSSNDASLPKPLQDPSLSKFSTLLGTKGKESLTSFHHSRLQHHQPFQVSLNHGAKPDGVYCKICQVSCSSPFNLKQHLRGHKHKQMLQKGERNSQMQWCEVCSITCTSEDLLKMHLQGQKHKAKLQMLEISKQGVEAPNKPKWCALCKLWCGDEFAFRLHLAGKKHKKENERWL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1081 366 MobiDBLite consensus disorder prediction 71 95 - -
Aed10g1081 366 SMART ZnF_U1_5 286 320 IPR003604 GO:0003676|GO:0008270
Aed10g1081 366 SMART ZnF_U1_5 248 282 IPR003604 GO:0003676|GO:0008270
Aed10g1081 366 SMART ZnF_U1_5 331 365 IPR003604 GO:0003676|GO:0008270
Aed10g1081 366 Pfam Zinc-finger of C2H2 type 252 275 - -
Aed10g1081 366 Pfam Zinc-finger of C2H2 type 290 313 - -
Aed10g1081 366 Pfam Zinc-finger of C2H2 type 335 358 - -
Aed10g1081 366 SUPERFAMILY beta-beta-alpha zinc fingers 287 321 IPR036236 -
Aed10g1081 366 SMART c2h2final6 334 358 IPR013087 -
Aed10g1081 366 SMART c2h2final6 251 273 IPR013087 -
Aed10g1081 366 SMART c2h2final6 289 313 IPR013087 -
Aed10g1081 366 Gene3D Classic Zinc Finger 324 365 - -
Aed10g1081 366 Gene3D Classic Zinc Finger 283 323 - -
Aed10g1081 366 Gene3D Classic Zinc Finger 233 282 - -
Aed10g1081 366 PANTHER ZINC FINGER RNA-BINDING PROTEIN 182 362 - -
Aed10g1081 366 PANTHER ZINC FINGER RNA-BINDING PROTEIN-LIKE 182 362 - -
Aed10g1081 366 SUPERFAMILY beta-beta-alpha zinc fingers 247 280 IPR036236 -
Aed10g1081 366 SUPERFAMILY beta-beta-alpha zinc fingers 324 365 IPR036236 -
Aed10g1081 366 MobiDBLite consensus disorder prediction 130 175 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1081 233 358 C2H2 Transcription Factor Family AT5G61190 28.105 3.83e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed10g1081 zf-met 9.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1081 - - gmx:102666094 291.967