Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1080 ATGAGTTTTGTTCAAAGAAGAAAAAAAACACATAGCACGAGAGAAGAAGTATCATCATCAATTTCATCATTAATGTCAGAGCAGGAAACCTATTCATGGGGCTTCCTGTTTCTCTCTTTCTTCATCCTTTTCTCAGGTAGTAAATTAGTTGTTGGTGATTCATTGGAAACCGATGCAAAAGTTCTTCTGAGGCTGAAATCATATTTGCAAAAACAAACAATTGCAGACAAAGGAGGGTACATAAGCTGGAACAAGAACAGTTCAAACCCTTGTGATTGGTCAGGAATCAAGTGCAGCAGCTTCTTAAATGGCACAACAAAGAGGGTTGTGAAAGTAGACATCTCTTACAGTGACATATATGGTAACATATTTGAAAGTTTCTCTCAACTCACTGAACTCACACACCTTGATATCTCTTGGAACTCTCTCTCTGGTGGTGTTCCTGAGGATTTGAGGAGGAGCCACAAGCTTGTGTATCTGAATCTCTCTCATAACACTCTTGGGGGTGAGTTGAATTTGAAGGGATTGACACAGTTGAAGACAGTGGATCTTTCTGTGAATAGATTTGTTGGGGGGCTTGGGTTGAGTTTCCCTGCTATTTGTGATAGTTTGGTTAGTTTGAATGTTTCTGATAATCACTTGAGTGGTGGTGTTGATGGTGGTTTCTTTGATCAATGCTTGAGGCTGCAGTACTTGGACTTGAGCACCAACCATCTCAATGGGACCCTATGGAGTGGATTTCACAGACTGAGAGAGTTTTCAATCTCGGAGAATTTTCTCACCGGGGTTGTTCCTTCCGAGGCTTTTCCTATCAACTGTAGTCTTGAAAAAATGGACCTTTCTGTTAATGCATTTGATGGCAAGCCCCCAAAGGAGGTTGCTAACTGCAAGAGTTTGGTGGTTCTTAATCTTTCTAGCAACAATTTCACTGGAGATATTCCTAGTGAGATTGGTTCCATTTCTGGTCTTGATGCATTGTTCTTGGGGAACAACACTTTCTCAAGGGAAATCCCAGAGACCCTTTTGAACTTGACCAATCTTTTCATCTTGGATTTGAGCAGAAACAAATTCGGTGGGGAATTGCAGCAGATTTTTGGAAGATTCAAGCAGCTGAAGTTTCTTGTGCTGCACTCAAACTCCTACACTAAAGGGTTGGACACATCAGGTATTTTTACTTTGACAAACCTTAGCCGTTTGGACATAAGCTTCAACAACTTTTCAGGTCCATTACCTGTTGAAATCTCACAAATGTATGGCCTCACTTTCTTAACCTTAACCTACAACAACTTCTCCGGACCTATTACATCTCAGCTTGGAAACTTGACTCGCCTCATGGTGCTTGATCTCGCCTTCAACAATTTCAGTGGTCCAATCCCACCAAGCCTTGGAAACTTGAGATCTCTCCTATGGTTAACCCTTTCAGACAATTCACTAACTGGAGAAATCCCTCCAGAGTTGGGAAACTGCTCAAGCATGCTATGGCTTAACCTTGCAAACAACAAACTCACTGGAAAATTTCCTTCTGAGCTAACAAGAATCGGAAGGAACGCGAGGGCGACGTTTGAAGTAAATAATAGAAACCTCGGAGGAGTTGTTGCTGGAAATAGTGAGTGCTTAGCAATGAAGAGATGGATACCTGCTGATTACCCTCCATTCAGCTTTGTGTATACAATCCTAACAAGGAAGAATTGTAGGGCCCTTTGGGACAGGTTGCTCAAAGGACATGGTATTTTCCCAATGTGTTCATCTCAGCCTTCTTCTAAATCATCACACATAGGAGGGTATGTTCAGCTGAGTGGTAACCAGTTGAGTGGTGAACTTCCCTCAGAAATTGGGACCATGGTGAACTTCAGCATGTTTCATTTGGGGGATAACAAGTTCACTGGGAAATTCCCTCAAGAGATGGTTTTTTTACCAATTGTGGTCTTGAACATGACAAGAAATGATTTTTCTGGTAAACTTCCAAGTGATATTGGCAACATAAAGTGTCTACAGGATCTGGATTTGTCTTGGAACAATTTCTCTGGAGAATTTCCCATTAGTTTGGCACATTTGGATGAGCTTAGCAGGTTCAACATCTCATACAACCCCCTCATATCTGGCACAGTCCCTCCTTCAGGACACTTACTCACTTTTGAAGAGGATTCATATTTAGGTGACCCTCTCTTGAACCTCCCAAAATTTTTCAACATCTCTGATGATAGAAACAAGACTTCAGGCAAAGTCTTGAAAAATCCCCCAAAATGGTCTTTGGTTTTGGCTCTAGCACTTGCTATTATGGTCTTTGGACTTATTTTCCTTGTAATATGTTTCTTGGTGAAGACTCCAAAGGTGGTGGAGCCAGGATACCTCATGAAGAACACAAAGAAGCAAGCACATGATTCCGGCAGCTCGGGATCCTCATCGTGGCGTTCGGACACCGTTAAGATATTCCATCTCAACAAGACAGCTTTCACACATGCTGACATCTTGAAGGCAACCTCCAACTTCACAGAGGAGAGAGTCATAGGAAGGGGTGGCTATGGAACGGTGTATAGAGGCTTGTTTCCAGACGGGAGAGAAGTGGCGGTGAAGAAGCTCCAAAGGGAAGGAACTGAGGGAGAGAAAGAATTCAGAGCTGAAATGAAGGTTTTAAGTGGCCATGGATTCAACTGGCCTCATCCAAACCTTGTCACACTCTATGGTTGGTGCCTCTATGGTTCACAAAAAGTACTTGTCTATGAGTACATAGGAGGTGGAAGCTTGGAGGAAATTGTGACTGATACAAAGAGGTTGACATCGAAGAGGCGCGTAGAAGTGGCCATCGACGTGGCTAGAGCACTCGTCTATCTACACCATGAGTGCTACCCTTCTATTGTGCACAGAGATGTGAAGGCTAGTAATGTGTTGCTTGACAAGGAAGGCAAGGCCAAAGTCACAGACTTTGGCCTTGCAAGAGTTGTTAATGTTGGAGACAGTCATGTGAGCACTATAGTGGCTGGAACAGTAGGGTATGTTGCACCAGAATATGGACAGACATGGCAAGCCACCACAAAGGGTGATGTGTATAGTTTTGGTGTGTTGGTGATGGAGCTGGCAACTGGGAGAAGAGCAGTGAATGGAGGTGAAGAAGAGTGTTTGGTGGAATGGACTCGGCGCGTTATGATGATGAGTTGTTCTTCTGGAAGACAAGGTTTTGGTTTTGGTCAATCTGTGCAAGTTTTGTTGAAGGGGTGTGGTGTGGTTGAGGGTGCAAAGGAGATGGGTGAGTTGTTCCAAGTTGGAGTGAAGTGCACACATGATGTACCACAGGCTAGGCCTAACATGAAGGAGGTTCTGGCTATGCTCATTAGGATATACAGTCCTCCCATTGGGGACTCAAATTATGGTCACATTGTGTAA 3381 0.4333 MSFVQRRKKTHSTREEVSSSISSLMSEQETYSWGFLFLSFFILFSGSKLVVGDSLETDAKVLLRLKSYLQKQTIADKGGYISWNKNSSNPCDWSGIKCSSFLNGTTKRVVKVDISYSDIYGNIFESFSQLTELTHLDISWNSLSGGVPEDLRRSHKLVYLNLSHNTLGGELNLKGLTQLKTVDLSVNRFVGGLGLSFPAICDSLVSLNVSDNHLSGGVDGGFFDQCLRLQYLDLSTNHLNGTLWSGFHRLREFSISENFLTGVVPSEAFPINCSLEKMDLSVNAFDGKPPKEVANCKSLVVLNLSSNNFTGDIPSEIGSISGLDALFLGNNTFSREIPETLLNLTNLFILDLSRNKFGGELQQIFGRFKQLKFLVLHSNSYTKGLDTSGIFTLTNLSRLDISFNNFSGPLPVEISQMYGLTFLTLTYNNFSGPITSQLGNLTRLMVLDLAFNNFSGPIPPSLGNLRSLLWLTLSDNSLTGEIPPELGNCSSMLWLNLANNKLTGKFPSELTRIGRNARATFEVNNRNLGGVVAGNSECLAMKRWIPADYPPFSFVYTILTRKNCRALWDRLLKGHGIFPMCSSQPSSKSSHIGGYVQLSGNQLSGELPSEIGTMVNFSMFHLGDNKFTGKFPQEMVFLPIVVLNMTRNDFSGKLPSDIGNIKCLQDLDLSWNNFSGEFPISLAHLDELSRFNISYNPLISGTVPPSGHLLTFEEDSYLGDPLLNLPKFFNISDDRNKTSGKVLKNPPKWSLVLALALAIMVFGLIFLVICFLVKTPKVVEPGYLMKNTKKQAHDSGSSGSSSWRSDTVKIFHLNKTAFTHADILKATSNFTEERVIGRGGYGTVYRGLFPDGREVAVKKLQREGTEGEKEFRAEMKVLSGHGFNWPHPNLVTLYGWCLYGSQKVLVYEYIGGGSLEEIVTDTKRLTSKRRVEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKEGKAKVTDFGLARVVNVGDSHVSTIVAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATGRRAVNGGEEECLVEWTRRVMMMSCSSGRQGFGFGQSVQVLLKGCGVVEGAKEMGELFQVGVKCTHDVPQARPNMKEVLAMLIRIYSPPIGDSNYGHIV 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1080 1126 ProSitePatterns Protein kinases ATP-binding region signature. 836 859 IPR017441 GO:0005524
Aed10g1080 1126 Pfam Leucine Rich Repeat 133 151 IPR001611 GO:0005515
Aed10g1080 1126 SUPERFAMILY L domain-like 107 316 - -
Aed10g1080 1126 CDD STKc_IRAK 836 1112 - -
Aed10g1080 1126 ProSitePatterns Serine/Threonine protein kinases active-site signature. 952 964 IPR008271 GO:0004672|GO:0006468
Aed10g1080 1126 Gene3D Ribonuclease Inhibitor 314 412 IPR032675 -
Aed10g1080 1126 Gene3D Ribonuclease Inhibitor 55 221 IPR032675 -
Aed10g1080 1126 Pfam Protein kinase domain 830 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1080 1126 SMART LRR_typ_2 393 417 IPR003591 -
Aed10g1080 1126 SMART LRR_typ_2 441 464 IPR003591 -
Aed10g1080 1126 SMART LRR_typ_2 130 154 IPR003591 -
Aed10g1080 1126 SMART LRR_typ_2 465 489 IPR003591 -
Aed10g1080 1126 SMART LRR_typ_2 344 367 IPR003591 -
Aed10g1080 1126 ProSiteProfiles Protein kinase domain profile. 830 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1080 1126 Pfam Leucine Rich repeat 154 170 IPR001611 GO:0005515
Aed10g1080 1126 Gene3D Ribonuclease Inhibitor 413 538 IPR032675 -
Aed10g1080 1126 Pfam Leucine rich repeat N-terminal domain 56 99 IPR013210 -
Aed10g1080 1126 Gene3D Ribonuclease Inhibitor 222 313 IPR032675 -
Aed10g1080 1126 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 26 1116 - -
Aed10g1080 1126 SMART serkin_6 830 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1080 1126 SUPERFAMILY L domain-like 295 700 - -
Aed10g1080 1126 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 26 1116 - -
Aed10g1080 1126 Gene3D Ribonuclease Inhibitor 578 738 IPR032675 -
Aed10g1080 1126 SUPERFAMILY Protein kinase-like (PK-like) 804 1110 IPR011009 -
Aed10g1080 1126 Gene3D Transferase(Phosphotransferase) domain 1 911 1116 - -
Aed10g1080 1126 Gene3D Phosphorylase Kinase; domain 1 792 909 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1080 Aed-Chr10 9795575 9800676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1080 92 1109 Receptor kinase-like Gene Family AT1G55610 30.961 4.45e-135 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Aed10g1080 Pkinase 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1080 - - gmx:100781769 1948.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1080 10 9795575 9800676 Aed10g1080 10 9795575 9800676 ECH