Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1076 ATGGGGTGCGTGAGCTCGAAGCAAGCGGTGGTGTCGGTGACGCCGGCGATTGACCACTCGGGCGCGTTCCGGACCAATGCGGCTCCGCCCGAGCCGGAGAAGAAGAGGAGCAACAAGAAGAGGAGCGAGTCGGGAGGAGCGAGTCAGAGCGAGGTAGGTGAGTCGGGGAGGACGAGTTCCAATTGCGACTCGCTCAGCTTCAGGCTGGGGAACCTTCACAAGTACGTCCAGGGCGAACACGTGGCTGCCGGCTGGCCGGCCTGGCTCAGCGCCGTCGCCGGCGAAGCCATTCACGGCTGGATAGGGCAGGGGACGTATAGCAGCGTGTTTAGGGCGAGGGAGCTTGAGACGGGGAAGATAGTGGCATTGAAGAAGGTGCGGTTCGACAACTTCGAACCGGAGAGTGTGCGGTTCATGGCGCGTGAGATACTCATTCTGCGGCGGCTTGATCACCCCAACATCATAAAGCTGGAGGGTTTGATTACTTCGAGGTTGTCGTGTAGTATTTACCTCATTAAGTGCTACATGAAGCAGTTGTTGGCTGGTCTTGAGCACTGTCACTTGCGAGGAGTGATGCATAGGGACATTAAGGGGTCCAATCTTTTGGTGAATAATGAAGGGGTTTTGAAGGTAGCAGATTTTGGGCTGGCGAATTATGTCAGTTCTGGGCACACACAACCTCTGACTAGTCGAGTTGTCACCTTGTGGTACCGGCCGCCGGAGCTTTTGCTCGGTTCGACAGATTATGGTCCGGCTGTGGATCTTTGGAGTGTTGGCTGTGTGTTTGCTGAGCTTCTTGTTGGGAAGCCTATACTTCAGGGAAGAACAGAGGTTGAACAATTGCACAAAATTTTCAAGCTCTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACTAGACTTCCTCATGCAACTCTATTTAAGCCACAGCATCCATATGATAGTTGCCTTCGACAGTCCTTCAAAGATTTGCCATCGACCAGTGTACATTTGCTACAAACTCTTCTTTCTGTGGAACCATACAAACGTGGGACTGCCACATCTGCTCTATCATCAGAGTATTTCAAAACAAAACCCTATGCGTGTGACCCATCAAGCTTGCCAATATACCCACCTAGCAAGGAAATCGATGCAAAACACAGGGAAGAATCAAGGAAGAAGATTAGTGGACGAGTGCGTGGAGCTGAAACAAGAAAGCCATCAAGAAAGCCTCTGGGATTCAATAAACTAGCACCAGCAGAGGATTTGGCAAGTCAAACTCAGACTTCCCAGAAAGTCAATGGTAGATCTTTCCGCATCCTTGAAGAAGAGAGGAAGAGGACTAAAACAGGTGACAAAGCACAAAAGCCATCAAGTGGTAAACCTGAAGATGCTTCTCATGTGAAGAATGCTTCTCAAGGAGACATTCCCCTTTCTGGACCATTACATGTTTCAACATCAAGTGGCTTTGCATGGGCAAAAAGCCGTAAAGATGATGCTTCATTTCGATCCCATTGTCGAACTATTTCAAGGGGACATGTTTTCAATCCATTAGAACCTTGTACATTAAATTCAAGGAATAAATTGGACACCAAAAACCAGGAATATAAGGAGTTTTCTGGGGGATGCACCAATTCTAGGGGCCATGACCTACTTGAATTTTCTAAGCTTTCAATGCAGAATCAGTGGAGTAAGTTTGATCGCCCAGATTCATTTGATGCTTCAGATGAGTACCACTCACAAGAATTGTCTATGGCCCTTTATCACAGAGAAGATACAACATCCAAGAGAAGTAACCTGGTAAGTTTAGTTTTCAAGATCAAGGAGAAAAGGTTGAATTTTCTGGGCCCCTACTATCTCAAATGCACACAGTTGACGAGCTCTTGGAAAGGCATGAGCGCCACATCCGGCGAACTGTCCGGAGATCATGGTTTCAGAAAGGCAAGAAGCTTGGGAAGTAAATCAATTTCTTGTAGGGCATTGACCTTGAGCATCATATCAAAATGA 1986 0.4804 MGCVSSKQAVVSVTPAIDHSGAFRTNAAPPEPEKKRSNKKRSESGGASQSEVGESGRTSSNCDSLSFRLGNLHKYVQGEHVAAGWPAWLSAVAGEAIHGWIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSIYLIKCYMKQLLAGLEHCHLRGVMHRDIKGSNLLVNNEGVLKVADFGLANYVSSGHTQPLTSRVVTLWYRPPELLLGSTDYGPAVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQHPYDSCLRQSFKDLPSTSVHLLQTLLSVEPYKRGTATSALSSEYFKTKPYACDPSSLPIYPPSKEIDAKHREESRKKISGRVRGAETRKPSRKPLGFNKLAPAEDLASQTQTSQKVNGRSFRILEEERKRTKTGDKAQKPSSGKPEDASHVKNASQGDIPLSGPLHVSTSSGFAWAKSRKDDASFRSHCRTISRGHVFNPLEPCTLNSRNKLDTKNQEYKEFSGGCTNSRGHDLLEFSKLSMQNQWSKFDRPDSFDASDEYHSQELSMALYHREDTTSKRSNLVSLVFKIKEKRLNFLGPYYLKCTQLTSSWKGMSATSGELSGDHGFRKARSLGSKSISCRALTLSIISK 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1076 661 MobiDBLite consensus disorder prediction 430 456 - -
Aed10g1076 661 PANTHER CELL DIVISION PROTEIN KINASE 172 601 - -
Aed10g1076 661 Gene3D Phosphorylase Kinase; domain 1 96 166 - -
Aed10g1076 661 PANTHER CELL DIVISION PROTEIN KINASE 1 172 - -
Aed10g1076 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Aed10g1076 661 MobiDBLite consensus disorder prediction 366 475 - -
Aed10g1076 661 ProSiteProfiles Protein kinase domain profile. 95 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1076 661 SMART serkin_6 95 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1076 661 SUPERFAMILY Protein kinase-like (PK-like) 97 362 IPR011009 -
Aed10g1076 661 Gene3D Transferase(Phosphotransferase) domain 1 167 393 - -
Aed10g1076 661 MobiDBLite consensus disorder prediction 19 60 - -
Aed10g1076 661 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 172 601 - -
Aed10g1076 661 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 172 - -
Aed10g1076 661 MobiDBLite consensus disorder prediction 43 60 - -
Aed10g1076 661 MobiDBLite consensus disorder prediction 374 403 - -
Aed10g1076 661 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Aed10g1076 661 MobiDBLite consensus disorder prediction 414 429 - -
Aed10g1076 661 Pfam Protein kinase domain 167 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1076 661 Pfam Protein kinase domain 100 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1076 Aed-Chr10 9693455 9700180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1076 101 414 Core Cell Cycle Gene Families AT5G10270 45.198 1.23e-93 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed10g1076 Pkinase 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1076 - - gmx:100803328 1098.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1076 10 9693455 9700180 Aed6g1598 6 19974730 19980427 ECH
Aed10g1076 10 9693455 9700180 Aed10g1076 10 9693455 9700180 ECH