Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1072 ATGGCTTCTTCTCTTTCCCCTTCTCCCTCTTCCCTCGACCAAACCCTTCGCGACGTCGACGACTACGTTTTGGAAAATGGGTCAGAAGATTTGTCATGGGACACACTTCGATATGTGTACGAACTTGTGAAGAATGGCAATGCGGCATTTCGAGAGAACAGAATGGAAGAGGCAATCAACTTTTACTCAAGAGCCAATAACATCAAATCAGGTGATCCAATCATCCTCAGCAATCGAAGTGCAGCTTATATTAGGATTAGCCAATATTTCATGCACAGAACACCATCATCTTCAGAACGTAGGCCATTGAGTGGGCTTGAACCCACAACACTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTGTTGAACTCCAAAGTAATTCAGCAAAATCATATCTTTTAAAGGCCAATGCTCTTCTACTGTTAGAGAAATATGAAAAAGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCTTTTAGTAATTCTCTACGAGCTTCTCTTCAAAATTTGGAAAGAGTTTCATCTAGTTCAACAGGGATGAGTACACATGTACATCCTGAACGTAATGATGATTTTGATTGCACTCTCTGCCTGAAGTTACTGTACGAACCTGTCACAACCCCTTGTGGACATTCTTTTTGCCGTTCGTGTCTATTTCAGTCAATGGATCGTGGAAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCCAGAACATGTTCCATCAGCGTGACATTGAAGAGCATCATCCAAAAGAACTTCCCAGAGGAATATGCCGAAAGGATGCAAGAGAATGGTGGTTTAAACAATGCTGGTGTAGATTTACTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAAAGGTTTCCACTCAATATATTTGAACCTCGGTATAGACTTATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGCTATACTTGATTCAACAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATCACGGAGTGTGAACCACTTCCAGATGGTCGTTTTTATATAGAGATTGAAAGTCGCAGGAGATTTCGTATCATCCGTTCCTGGGATCAAGATGGGTATCGTGTTGCAGAGGTCGAATGGATACAGGATATTATGCCACCAGAAGGGACAAGTGACAGAGAGACTTTATTGCAACTTTCATATAATGCGGCCGAAGATGCTCGATCATGGATAGCAAGAGCCAAAGAAGCAGCAAGACATGATCAAAGAAAACTTGAGAGACTCACCAGTGTTGAAGTACTGATGCCCTCACCAAAAGACCCTGAGCGCTTTAGTTTTTGGAGGATTAGACGTGGCCTGATATTTCTCCGACAAGAACAAGGCTGCAGAATTCAGTAA 1389 0.4262 MASSLSPSPSSLDQTLRDVDDYVLENGSEDLSWDTLRYVYELVKNGNAAFRENRMEEAINFYSRANNIKSGDPIILSNRSAAYIRISQYFMHRTPSSSERRPLSGLEPTTLAELGLKDAEKLVELQSNSAKSYLLKANALLLLEKYEKARDVILSGLQVDPFSNSLRASLQNLERVSSSSTGMSTHVHPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKSIIQKNFPEEYAERMQENGGLNNAGVDLLPLFVMDVVIPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMAILDSTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPPEGTSDRETLLQLSYNAAEDARSWIARAKEAARHDQRKLERLTSVEVLMPSPKDPERFSFWRIRRGLIFLRQEQGCRIQ 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1072 462 Pfam Zinc finger, C3HC4 type (RING finger) 197 234 - -
Aed10g1072 462 Gene3D Tetratricopeptide repeat domain 38 185 IPR011990 GO:0005515
Aed10g1072 462 SMART lon_5 280 455 IPR003111 -
Aed10g1072 462 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Aed10g1072 462 SUPERFAMILY PUA domain-like 281 408 IPR015947 -
Aed10g1072 462 SMART ring_2 197 234 IPR001841 -
Aed10g1072 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 276 IPR013083 -
Aed10g1072 462 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Aed10g1072 462 SMART tpr_5 39 72 IPR019734 GO:0005515
Aed10g1072 462 SMART tpr_5 130 163 IPR019734 GO:0005515
Aed10g1072 462 ProSiteProfiles Lon N-terminal domain profile. 278 462 IPR003111 -
Aed10g1072 462 Pfam ATP-dependent protease La (LON) substrate-binding domain 281 406 IPR003111 -
Aed10g1072 462 SUPERFAMILY RING/U-box 190 260 - -
Aed10g1072 462 PANTHER RING FINGER PROTEIN 127 15 445 - -
Aed10g1072 462 SUPERFAMILY TPR-like 39 170 IPR011990 GO:0005515
Aed10g1072 462 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 15 445 - -
Aed10g1072 462 Gene3D - 279 380 IPR046336 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1072 Aed-Chr10 9639590 9648796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1072 185 238 C3H Transcription Factor Family AT1G74990 35.088 4.62e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1072 - - gmx:100802277 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1072 10 9639590 9648796 Aed10g1072 10 9639590 9648796 ECH