Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1062 ATGGGAAGGACTCCTTGCTGCAATCATGAGGATCTGAGAAAAGGGGCATGGATGCTTCAAGAAGACCAGCAACTCGTTTCTTACATTCAGGAACATGGCACAGGAAGCTGGCGTACCTTGCCACAGAAAGCAGGTCTTCAAAGATGTGGAAAGAGTTGCAGGCTGAGATGGTTTAACTACCTTAGACCTGGCATTAAGAGAGGAAAATTAAGCCAAGAAGAAGAGCAGAAAATTATAAAACTTCAGGCTGTTCTTGGCAACAGTATTGCAAAGCACTTACCGAGGCGAACAGATAACGAAATAAAGAACTATTGGAACTCATATCTGAAAAAGCAGTTTGAAAAGAATGCTGCTGTGGATCCCTCAACAAGTCCAAAAAAACCAATTAGCACTGATCATAGTTCCACAGAATCAAAATCCTGTGACAACATATGCATGATGGTTCCATCAAAAGAAACAGATTCCCATGTTCCGAAAAACACCAACCAATCTCACCATCATAATCAACACAGCATAATATCAACAAAGTCAACTTCATCTTCCACTAATAATCTTCTCAACAAAGTTGCTAGTAAAATCCTGGCATCTGGCTACCTAGAAGCAATCAAATCATGCCAACCTGGAATTGGGTTAGAAAAGGACCCCCTTTTTCCTAATTTGACATCACCAAGTCATTCAGTAACTTCTGCCAAGTTACTGAACAAGATGGCTACTTCACTCAATGGCCTTGAAGCTGCAAAAGTTGTGTTCTCAAAGCTGATCATGGAAAAAAGCAGTGAAAAATCTGACACTGCTAGTGATGGCAGCCTTATTGCTTTAAGCCCTTTTGAGGATAATGGACCACAACCACAACAACACACACCAACAAATATAATTGACTCTCCTTCTTCTAGTACTCCTAATACTCTAATGTTCAACCAATTAGTGGCCACACCCTCATGCTTTTCAGATCATGAAGATAACTGGCAGCAATGTGTTTCATCATCTAATAACTATGTTTCCTTCAGCAGTGGCGGTGAGTGCAGTGTGTCTGAAATGAACTTGGGTCATGATCAGAAACTCCTCTCAACTCATTGA 1077 0.4085 MGRTPCCNHEDLRKGAWMLQEDQQLVSYIQEHGTGSWRTLPQKAGLQRCGKSCRLRWFNYLRPGIKRGKLSQEEEQKIIKLQAVLGNSIAKHLPRRTDNEIKNYWNSYLKKQFEKNAAVDPSTSPKKPISTDHSSTESKSCDNICMMVPSKETDSHVPKNTNQSHHHNQHSIISTKSTSSSTNNLLNKVASKILASGYLEAIKSCQPGIGLEKDPLFPNLTSPSHSVTSAKLLNKMATSLNGLEAAKVVFSKLIMEKSSEKSDTASDGSLIALSPFEDNGPQPQQHTPTNIIDSPSSSTPNTLMFNQLVATPSCFSDHEDNWQQCVSSSNNYVSFSSGGECSVSEMNLGHDQKLLSTH 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1062 358 MobiDBLite consensus disorder prediction 152 180 - -
Aed10g1062 358 PANTHER TRANSCRIPTION FACTOR MYB51 1 228 - -
Aed10g1062 358 SUPERFAMILY Homeodomain-like 12 105 IPR009057 -
Aed10g1062 358 MobiDBLite consensus disorder prediction 277 298 - -
Aed10g1062 358 CDD SANT 16 61 IPR001005 -
Aed10g1062 358 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed10g1062 358 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Aed10g1062 358 Gene3D - 69 142 - -
Aed10g1062 358 CDD SANT 71 109 IPR001005 -
Aed10g1062 358 Gene3D - 14 66 - -
Aed10g1062 358 MobiDBLite consensus disorder prediction 116 138 - -
Aed10g1062 358 ProSiteProfiles Myb-like domain profile. 62 109 IPR001005 -
Aed10g1062 358 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed10g1062 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 113 IPR017930 -
Aed10g1062 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aed10g1062 358 MobiDBLite consensus disorder prediction 278 298 - -
Aed10g1062 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 228 - -
Aed10g1062 358 MobiDBLite consensus disorder prediction 154 180 - -
Aed10g1062 358 SMART sant 66 111 IPR001005 -
Aed10g1062 358 SMART sant 13 63 IPR001005 -
Aed10g1062 358 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1062 Aed-Chr10 9459216 9462807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1062 1 197 MYB Transcription Factor Family AT5G07690 49.510 9.11e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed10g1062 Myb_DNA-binding 5.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1062 K09422 - gmx:100775267 422.165