Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1057 ATGGCACTTTTGTGGGTTCTCTTGGTGGGATTTCTTTCTCTGGCTTCATCTGTCTCAGCTTCTTCTGGCTATGGTTGGGTGGATGCTCATGCAACCTTCTATGGAGGGGGTGATGCCTCTGGCACCATGGGTGGGGCATGTGGATATGGGAACTTGTACAGCCAGGGCTATGGAACAAACACTGCTGCTTTGAGCACAGCTTTGTTCAACAACGGTTTGAGCTGTGGGGCATGTTTCGAGATTAAGTGTGTTAATGACCAAAGGGTCCCTTGCCGAAAGAGAGGGGGCATCAGATTCACCATCAACGGCCACTCATACTTCAACCTAGTCCTAATCACCAACGTTGGAGGTGCTGGTGATGTCCACGCAGTTTCCATCAAAGGCTCAAGAACAACAAACTGGACACCAATGACCAGAAACTGGGGCCAGAACTGGCAAAGCAACTCCTACCTCAATGGCCAAAGCCTCTCCTTCAAGGTCACCGCTAGCGATGGACGCACCGTGGTCTCTAACAATGTCGCACCCTCGAGCTGGTCCTTTGGCCAAACCTTCAACGGCCATCAATTTGTTTAA 573 0.5079 MALLWVLLVGFLSLASSVSASSGYGWVDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDQRVPCRKRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTTNWTPMTRNWGQNWQSNSYLNGQSLSFKVTASDGRTVVSNNVAPSSWSFGQTFNGHQFV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1057 190 SUPERFAMILY Barwin-like endoglucanases 25 114 IPR036908 -
Aed10g1057 190 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Aed10g1057 190 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Aed10g1057 190 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Aed10g1057 190 PANTHER EXPANSIN 5 88 - -
Aed10g1057 190 Gene3D - 101 189 IPR036749 -
Aed10g1057 190 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 106 186 IPR007117 -
Aed10g1057 190 Pfam Expansin C-terminal domain 97 175 IPR007117 -
Aed10g1057 190 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 109 IPR007112 -
Aed10g1057 190 SMART dpbb_1 61 139 IPR007112 -
Aed10g1057 190 PANTHER EXPANSIN-A15 5 88 IPR002963 GO:0009664
Aed10g1057 190 PANTHER EXPANSIN 87 189 - -
Aed10g1057 190 Gene3D - 27 100 IPR036908 -
Aed10g1057 190 PANTHER EXPANSIN-A15 87 189 IPR002963 GO:0009664
Aed10g1057 190 SUPERFAMILY PHL pollen allergen 93 185 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1057 Aed-Chr10 9388797 9391622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1057 1 189 Expansin Gene Family AT2G03090 59.036 8.90e-89 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1057 - K20628 egt:105961626 288.5