Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1052 ATGGAGAATCAGCAATTTTGGAAGTCTAATCATGAAATTGAAGACTATCCTCCTTTTGCACCTACGTGCCAACAATTTTCTTCATATGATTATTTCAGGGGCAGTGCTAATGATCAAGGATATCATCAATATTGGCCATATGATCAATTTCCTTTGCAACAAGATACTAGTTGCTATCTTGATGCTATCCATTTTATGAAGTGTTATTATCCTCATCATGACATTTTGTATGAAACTCTTCCCATTGAACCAACCCCTCTAAGCATAGAAGACTATGACTTTTGTGATGTAAAAAATGTGCTTTCTTCATGGAACGAAATTGATGGTTCTTCGGATCATAAGCCTGTGTTTTCATCATGCAATGATGGAGAGAGTGTAGCGGATGAAATTGAAGTGAAGGAAGATTTGAAGGGTGAGAAATGCAGAGAAGATCAGAGAATTGGCAGCAGCAGTGCTAGAATGTTGTCAAGGAAAACCGTTTCTGAATACTTTTACATGCCAATTTCACAAGCTGCAAGAGATCTTAATGTGGGCCTCACACACTTGAAGAAAAGGTGTAGGGAGTTAGGAATTCAAAGGTGGCCACACAGGAAGCTGATGAGTCTCCAAACCTTAATAAAGAATGTACAAGAGCAAGGAGAGGTGGAGGGGCATGAGAATGATGAAAAAATAAGGAGTGCTGTAGAGATGTTGGAGAGAGAGAAGAGGAAGGTGGAGGAAATGCCAGATTTGGAGCTTGAGGATAACACAAGAAGGCTTAGACAAGCTTGTTTTAAGGCTAACTACAAGAAGAGGAAACTCATGGGCATGAGGTTCAATGTTGAATCCCAGTCTTCTTCTTCTTCTTGTCTTAGTGCTCTATCCAACAAGTATTGA 876 0.3961 MENQQFWKSNHEIEDYPPFAPTCQQFSSYDYFRGSANDQGYHQYWPYDQFPLQQDTSCYLDAIHFMKCYYPHHDILYETLPIEPTPLSIEDYDFCDVKNVLSSWNEIDGSSDHKPVFSSCNDGESVADEIEVKEDLKGEKCREDQRIGSSSARMLSRKTVSEYFYMPISQAARDLNVGLTHLKKRCRELGIQRWPHRKLMSLQTLIKNVQEQGEVEGHENDEKIRSAVEMLEREKRKVEEMPDLELEDNTRRLRQACFKANYKKRKLMGMRFNVESQSSSSSCLSALSNKY 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1052 291 Pfam RWP-RK domain 155 202 IPR003035 -
Aed10g1052 291 PANTHER PROTEIN RKD1-RELATED 47 282 - -
Aed10g1052 291 Coils Coil 221 241 - -
Aed10g1052 291 ProSiteProfiles RWP-RK domain profile. 137 223 IPR003035 -
Aed10g1052 291 PANTHER PROTEIN RKD4 47 282 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1052 Aed-Chr10 9342005 9343414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1052 140 270 AtRKD Transcription Factor Family AT1G18790 61.832 6.06e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aed10g1052 RWP-RK 7.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1052 - - gmx:100782238 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1052 10 9342005 9343414 Aed10g1052 10 9342005 9343414 ECH