Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1044 ATGGGAAGACCACCTTGCTGCGACAAAATTGGGATTAAGAAAGGACCTTGGACTCCTGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAACATGGACCCGGGAATTGGAGATCAGTTCCCACTAACACAGGTTTGATGAGATGCAGCAAAAGCTGCAGACTGAGATGGACCAACTATCTCCGACCCGGAATCAAACGAGGGAATTTCACTGATCATGAAGAGAAAATGATTATCCACCTCCAAGCTCTTTTGGGTAACAGATGGGCTGCTATAGCTTCCTACCTTCCACAGAGGACAGATAATGACATAAAGAACTATTGGAACACACATCTAAGAAAGAAGCTGAAGAAGATGCAAAACGGTGATGATGATGACATCAGTAGTAATAATGATGACGAGAAAGGAAACAACGACTCTTGCAATTCTTCACAAATGAAGGGTCAGTGGGAGAGGAGGCTCCAAACAGATATCCACATGGCCAAACAAGCCTTGTGTGAGGCTCTATCACTCGACAAACCAACCCAAATTTTCCCAGAGACCAAATTGCCCTCCACCACCACAAAAACAACAGCAACACCGAACCAACAATCAACATCTTTGTACGCATCGAGCACGGAAAACATAGCCAGATTGCTGGAGGATTGGATGAAGAAATCCCCAAATACAACGACGGTGACGACGGAGACAAAACCCTTCATCAGCAACAACTACATGGTGGTAGCCAGTAGCTCCAGTGATGAGGGAACAACACAAAGCACAATCACATGCGCACATGACCATCATGCCCTTGACTCCTTGTGGAGCTTCAACTCTGAACGCTCTTCTACTCAATCTGAAGAAAACACTACGCAAGTCCCTCTCATGTTGCTGGAGAATTGGCTCTTTGATGATGCTGCTGCAGTACCTCAATGCAATAACGAGGATCTAATCAACATGTCACTCGAAGAAAGTACGGAAGGATTGTTCTAG 972 0.4516 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKMQNGDDDDISSNNDDEKGNNDSCNSSQMKGQWERRLQTDIHMAKQALCEALSLDKPTQIFPETKLPSTTTKTTATPNQQSTSLYASSTENIARLLEDWMKKSPNTTTVTTETKPFISNNYMVVASSSSDEGTTQSTITCAHDHHALDSLWSFNSERSSTQSEENTTQVPLMLLENWLFDDAAAVPQCNNEDLINMSLEESTEGLF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1044 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed10g1044 323 CDD SANT 69 112 IPR001005 -
Aed10g1044 323 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aed10g1044 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed10g1044 323 MobiDBLite consensus disorder prediction 118 150 - -
Aed10g1044 323 CDD SANT 16 61 IPR001005 -
Aed10g1044 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aed10g1044 323 Gene3D - 13 66 - -
Aed10g1044 323 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 311 - -
Aed10g1044 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aed10g1044 323 MobiDBLite consensus disorder prediction 134 150 - -
Aed10g1044 323 SMART sant 13 63 IPR001005 -
Aed10g1044 323 SMART sant 66 114 IPR001005 -
Aed10g1044 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed10g1044 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed10g1044 323 Gene3D - 68 145 - -
Aed10g1044 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1044 Aed-Chr10 9235260 9236938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1044 1 323 MYB Transcription Factor Family AT5G62470 51.374 2.96e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed10g1044 Myb_DNA-binding 9.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1044 K09422 - gmx:100794319 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1044 10 9235260 9236938 Aed10g1044 10 9235260 9236938 ECH